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The map label for this gene is potC [H]

Identifier: 163845213

GI number: 163845213

Start: 1080674

End: 1081477

Strand: Reverse

Name: potC [H]

Synonym: BSUIS_B1100

Alternate gene names: 163845213

Gene position: 1081477-1080674 (Counterclockwise)

Preceding gene: 163845214

Following gene: 163845212

Centisome position: 77.2

GC content: 58.21

Gene sequence:

>804_bases
ATGAAAACGCGAAATCTGCTTCTGAACGCCTATGTCTATCTGGTGCTGTGCTTTCTGGTGGTGCCGATCCTGATCATCTT
GCCGATGGCCTTCAGCGAAACCGGCTACATCACCTTTCCACCCAAGGGGTTCACATGGCAGTGGTTCGGGGCCTTCTTCC
AATCGCCGCAGTGGATGAGCGCAACCGCCTTCAGCGGCAAGATTGCGTTTTTCACCGCGCTGGCAAGTGCACTGATCGGA
CTATGTGCGAGCTATGCCATCGTTCGCGGAAAGGGTGCGCTCGCAACTGTCTTCCAGACCCTGCTGATCGGGCCGATCGT
CGTGCCCCATATCGCCCTGGCAATCGCGCTTTATCTCCTGTTCCAGACGATAGGGCTGACCGAAACGACGACAGGCTATG
TCATCGCACATACGATTATCGCGCTGCCGTTCTGCGTGTTTACGATCGTGGCCGCCCTGTCGCAGGTTGACCCTGCACTG
GAAGATGCCGCCATGTGCTGCGGCGCCAACAGGTTTCTGGCCTTTCGCGCGGTCACTCTGCCCCTGATATGGCCGAATGT
TCTCTCCGGCGCGCTTTTTGCTTTCGTTATCTCGTTTGACGAGCCTGTCATTTCCTTTTTCCTGGCGGGTGTGCGCGACA
AGACCCTGCCGCGCATGATGTTCGACGACATCGAGCAGAATCTGACGCCGGTGATCCCGGCTATCGCGGTGATGCTGACG
CTGCTGTCCATCCTCGTGCTGGTCGGCGCCGCCGGTCTTCGCACGCTGGCCGCGCGCTCTCAAAAAGTAGTGTCCGATGA
TTGA

Upstream 100 bases:

>100_bases
TTGCCGCCGCACTGGTGGGCGTCCTGACCGTGCTTGTGACTGTGGTGACATTGCTCTTCAGCCGCGTTTTCAAGTTCAAC
CGAATGATGGGAGGCGGCGT

Downstream 100 bases:

>100_bases
AATAAAAAATAGAAGAGAGGGAAACATGTCCAAGAAAATAAAAACGATGACTGTGCTGGCCGCGGTTCTGCTGGCTGGCG
GTGCGCTTGCCGCAAAAGCC

Product: hypothetical protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKTRNLLLNAYVYLVLCFLVVPILIILPMAFSETGYITFPPKGFTWQWFGAFFQSPQWMSATAFSGKIAFFTALASALIG
LCASYAIVRGKGALATVFQTLLIGPIVVPHIALAIALYLLFQTIGLTETTTGYVIAHTIIALPFCVFTIVAALSQVDPAL
EDAAMCCGANRFLAFRAVTLPLIWPNVLSGALFAFVISFDEPVISFFLAGVRDKTLPRMMFDDIEQNLTPVIPAIAVMLT
LLSILVLVGAAGLRTLAARSQKVVSDD

Sequences:

>Translated_267_residues
MKTRNLLLNAYVYLVLCFLVVPILIILPMAFSETGYITFPPKGFTWQWFGAFFQSPQWMSATAFSGKIAFFTALASALIG
LCASYAIVRGKGALATVFQTLLIGPIVVPHIALAIALYLLFQTIGLTETTTGYVIAHTIIALPFCVFTIVAALSQVDPAL
EDAAMCCGANRFLAFRAVTLPLIWPNVLSGALFAFVISFDEPVISFFLAGVRDKTLPRMMFDDIEQNLTPVIPAIAVMLT
LLSILVLVGAAGLRTLAARSQKVVSDD
>Mature_267_residues
MKTRNLLLNAYVYLVLCFLVVPILIILPMAFSETGYITFPPKGFTWQWFGAFFQSPQWMSATAFSGKIAFFTALASALIG
LCASYAIVRGKGALATVFQTLLIGPIVVPHIALAIALYLLFQTIGLTETTTGYVIAHTIIALPFCVFTIVAALSQVDPAL
EDAAMCCGANRFLAFRAVTLPLIWPNVLSGALFAFVISFDEPVISFFLAGVRDKTLPRMMFDDIEQNLTPVIPAIAVMLT
LLSILVLVGAAGLRTLAARSQKVVSDD

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=209, Percent_Identity=27.7511961722488, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787714, Length=241, Percent_Identity=30.7053941908714, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787081, Length=255, Percent_Identity=30.1960784313725, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28893; Mature: 28893

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRNLLLNAYVYLVLCFLVVPILIILPMAFSETGYITFPPKGFTWQWFGAFFQSPQWMS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCCC
ATAFSGKIAFFTALASALIGLCASYAIVRGKGALATVFQTLLIGPIVVPHIALAIALYLL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQTIGLTETTTGYVIAHTIIALPFCVFTIVAALSQVDPALEDAAMCCGANRFLAFRAVTL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHH
PLIWPNVLSGALFAFVISFDEPVISFFLAGVRDKTLPRMMFDDIEQNLTPVIPAIAVMLT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LLSILVLVGAAGLRTLAARSQKVVSDD
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTRNLLLNAYVYLVLCFLVVPILIILPMAFSETGYITFPPKGFTWQWFGAFFQSPQWMS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCCC
ATAFSGKIAFFTALASALIGLCASYAIVRGKGALATVFQTLLIGPIVVPHIALAIALYLL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQTIGLTETTTGYVIAHTIIALPFCVFTIVAALSQVDPALEDAAMCCGANRFLAFRAVTL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHH
PLIWPNVLSGALFAFVISFDEPVISFFLAGVRDKTLPRMMFDDIEQNLTPVIPAIAVMLT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LLSILVLVGAAGLRTLAARSQKVVSDD
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]