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The map label for this gene is rpoZ

Identifier: 16273628

GI number: 16273628

Start: 1828934

End: 1829200

Strand: Reverse

Name: rpoZ

Synonym: HI1742

Alternate gene names: 16273628

Gene position: 1829200-1828934 (Counterclockwise)

Preceding gene: 16273629

Following gene: 30995477

Centisome position: 99.95

GC content: 36.33

Gene sequence:

>267_bases
ATGGCTCGTGTTACTGTGCAAGATGCAGTAGAAAAAATTGGTAACCGTTTTGATTTAATTTTAACGGCTGCACGTCGTGC
AAGACAATTACAACTTAATCAAAGTGCACCATTAGTGCCAGAAGATAATGACAAACCAACAGTAATCGCATTACGTGAAA
TCGAAAAAGGTTTGATTAATCAAGATATTATGGATGCACAAGAATTCCAAAAAATGGCGAAAGTGCAAGAAACGGAAGAA
GCAGCTGTTGCATTAATTACAGAATAA

Upstream 100 bases:

>100_bases
AAAATGCAATGTTAATTCAACAGCTACTAGCAAAATAGGGCGAAATTGAGTATTATAACGCCCTTTCAATAGAGTAATTT
TTGACAAATCGGAGTAAATT

Downstream 100 bases:

>100_bases
TCTTTTAAAAGTGCGGTAAAAAATAAAGGTATTTTACCGCGGGTAGGTATACCCACGGTTAATTATGGTTATAGTTGTCC
CCCTTTGGGGAACGTAATTT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSAPLVPEDNDKPTVIALREIEKGLINQDIMDAQEFQKMAKVQETEE
AAVALITE

Sequences:

>Translated_88_residues
MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSAPLVPEDNDKPTVIALREIEKGLINQDIMDAQEFQKMAKVQETEE
AAVALITE
>Mature_87_residues
ARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSAPLVPEDNDKPTVIALREIEKGLINQDIMDAQEFQKMAKVQETEEA
AVALITE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=78.4615384615385, Blast_Score=105, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_HAEI8 (Q4QJK4)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_249453.1
- STRING:   Q4QJK4
- GeneID:   3431302
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI2053
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   EENDKYT
- PhylomeDB:   Q4QJK4
- ProtClustDB:   PRK00392
- BioCyc:   HINF281310:NTHI2053-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9860; Mature: 9729

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSAPLVPEDNDKPTVIALREIEKGLIN
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHCC
QDIMDAQEFQKMAKVQETEEAAVALITE
CHHCCHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
ARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSAPLVPEDNDKPTVIALREIEKGLIN
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHCC
QDIMDAQEFQKMAKVQETEEAAVALITE
CHHCCHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA