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The map label for this gene is rnfB

Identifier: 16273571

GI number: 16273571

Start: 1753649

End: 1754230

Strand: Direct

Name: rnfB

Synonym: HI1684

Alternate gene names: 16273571

Gene position: 1753649-1754230 (Clockwise)

Preceding gene: 16273570

Following gene: 16273572

Centisome position: 95.82

GC content: 39.18

Gene sequence:

>582_bases
ATGACCTTTTTATTCATCGTAATTACGCTACTCGCTTTAATTTTCGGTGCGATTTTGGGCTTTGCATCAATCAAGCTCAA
AGTGGAAGCTGATCCTGTCGTAGAGAAAATTGATGCTATTTTACCGCAAAGCCAATGTGGGCAATGTGGTTATCCTGGTT
GTAAGCCTTATGCTGAAGCCATTTGCAATGGCGATGAAATCACAAAATGTATTCCAGGTGGTCAAACAACTATCGTAAAA
ATTGCCGAAATTTTAGGGGTTGATGTACCAACAATGGAGGGCATAGAAGAACCTATCGAGAAAGTTGCTTTTATTGATGA
AAATATGTGTATTGGCTGCACAAAATGTATCCAAGCCTGTCCCGTTGATGCCATTATTGGTACAAATAAAGCAATGCACA
CGATTATTCCCGATCTTTGTACAGGTTGCGAGCTTTGTGTTGCGCCCTGCCCGACAGATTGTATTTTAATGATTCCCGTG
AAAAAAAATATTGATAATTGGGATTGGAAATTTGATGCAAAACTCGTTATTCCAGTAATGAATGTCGATGGCTCTGAAAA
AAAATTGGTTGTGGGGGAATAA

Upstream 100 bases:

>100_bases
ACTTGTAAAATAATAAAATGATTTACCTTTTAATGATAATAACTCTGTTAATTTTATTTATTGGGTTCTCTCAGTATTTT
TCAGGAAAAAGAAAGAAATA

Downstream 100 bases:

>100_bases
ATGGCGGACGTATTATCTCGTTTCAATTCCGGTAAATTATGGGATTTCAAAGGTGGCATTCATCCACCAGAAATGAAATC
TCAATCTAATTCACAGCCAT

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVK
IAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPV
KKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE

Sequences:

>Translated_193_residues
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVK
IAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPV
KKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>Mature_192_residues
TFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKI
AEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVK
KNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=169, Percent_Identity=62.1301775147929, Blast_Score=221, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_HAEI8 (Q4QJQ7)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_249400.1
- HSSP:   Q28943
- ProteinModelPortal:   Q4QJQ7
- SMR:   Q4QJQ7
- STRING:   Q4QJQ7
- GeneID:   3431240
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI1990
- eggNOG:   COG2878
- HOGENOM:   HBG549899
- OMA:   ITKCVPG
- PhylomeDB:   Q4QJQ7
- ProtClustDB:   PRK05113
- BioCyc:   HINF281310:NTHI1990-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 20762; Mature: 20631

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
10.4 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
9.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEA
CHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
ICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQAC
HCCCCHHHEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHC
PVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVM
CCHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCCCCCEEECCEEEEEEE
NVDGSEKKLVVGE
CCCCCCCEEEECC
>Mature Secondary Structure 
TFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEA
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
ICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQAC
HCCCCHHHEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHC
PVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVM
CCHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCCCCCEEECCEEEEEEE
NVDGSEKKLVVGE
CCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA