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The map label for this gene is rnfA [H]

Identifier: 16273570

GI number: 16273570

Start: 1752983

End: 1753561

Strand: Direct

Name: rnfA [H]

Synonym: HI1683

Alternate gene names: 16273570

Gene position: 1752983-1753561 (Clockwise)

Preceding gene: 16273569

Following gene: 16273571

Centisome position: 95.78

GC content: 37.13

Gene sequence:

>579_bases
ATGACGCACTATATTTTATTGATTATCGGCACCGCATTAATTAACAATTTTGTATTGGTAAAATTCTTAGGTCTTTGCCC
TTTTATGGGTGTATCCAAAAAAATTGAAACGGCTGTGGGAATGGGATTAGCAACAATGTTTGTTTTAACTGTTGCTTCCC
TTTGTGCATATTTGGTCGATCACTATATTCTAATTCCCTTAAATGCCACTTTTTTACGTACATTAGTGTTTATTTTAGTT
ATTGCTGTAGTGGTGCAATTTACCGAAATGGCAATAAACAAAACAAGTCCAACATTATATCGTTTACTCGGCATTTTCTT
GCCTTTGATAACTACAAACTGCGCAGTACTTGGTGTCGCATTATTAAATGTAAATCTCGCTCATAATTTAACAGAGTCTG
TCGTTTATGGTTTTGGTGCATCTCTCGGCTTTTCCTTAGTATTGGTACTTTTTGCCGCGCTTCGTGAACGTTTAGTCGCC
GCTGATATACCTGCCACTTTTCGCGGTTCATCCATTGCTTTAATTACCGCAGGCTTAATGTCCCTCGCTTTTATGGGATT
TACAGGACTTGTAAAATAA

Upstream 100 bases:

>100_bases
AACAAAATCGCAACTTACCATTTCCCCTTAGCAAAATTTTCTATTGTTCTTGCTTCCATAAATAGGGATAATAACGCCCC
TATTCAAAAGGCAAAAAATA

Downstream 100 bases:

>100_bases
TAAAATGATTTACCTTTTAATGATAATAACTCTGTTAATTTTATTTATTGGGTTCTCTCAGTATTTTTCAGGAAAAAGAA
AGAAATAATGACCTTTTTAT

Product: Na(+)-translocating NADH-quinone reductase subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILV
IAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVA
ADIPATFRGSSIALITAGLMSLAFMGFTGLVK

Sequences:

>Translated_192_residues
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILV
IAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVA
ADIPATFRGSSIALITAGLMSLAFMGFTGLVK
>Mature_191_residues
THYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVI
AVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAA
DIPATFRGSSIALITAGLMSLAFMGFTGLVK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=77.6041666666667, Blast_Score=307, Evalue=3e-85,
Organism=Escherichia coli, GI1787919, Length=142, Percent_Identity=35.9154929577465, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20590; Mature: 20459

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVA
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSSIALITAGLM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVK
HHHHHHHHHCCC
>Mature Secondary Structure 
THYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVA
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSSIALITAGLM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVK
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA