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The map label for this gene is ccmF

Identifier: 16273022

GI number: 16273022

Start: 1156609

End: 1158555

Strand: Direct

Name: ccmF

Synonym: HI1094

Alternate gene names: 16273022

Gene position: 1156609-1158555 (Clockwise)

Preceding gene: 16273021

Following gene: 16273023

Centisome position: 63.2

GC content: 41.45

Gene sequence:

>1947_bases
ATGATTGCTGAATTAGGAAATTACGCACTTGCTTTAAGTTTAGCTGTATCGCTTATGTTGGCGATTTTCCCTTTGTGGGG
GGCGGAAAAGGGCAATGCACAATTAATGGCATTAGCTCGCCCAATGACTTATGGTTTATTTGCAAGCCTAAGCATTGCTT
TTGCTGCGCTATTTTATTTATTCGCAGTCAATGATTTTAGCGTGCAATATATTGTAAATAATTCTAATACTACTTTACCC
ATTTATTATCGTTTATCTGCGGTATGGGGTTCCCATGAAGGCTCTTTGTTACTGTGGATTTGGTTACTGGCGGTTTGGTC
ATTTGCCGTTGCTTTATTGAGTAAACATTTACCCCAAGAAGCGGTTGCTCGCGTGCTTGGTATTATGGGGATTATTAGCG
TCGGTTTTGTATTGTTCGTCTTGTTTACCTCAAATCCTTTCACGCGTACTTTCCCTGATTTCCCAGTGGATGGAAAAGAA
CTTAACCCAATGTTGCAAGATGTAGGCTTGATTTTCCACCCTCCATTACTTTATATGGGCTATGTGGGTTTTTCGGTGGC
ATTTGCGTTTGCGATAGCATCCTTAATGACTGGAAAATTAGATTCAGCTTGGGCTCGTTGGTCACGTCCTTGGACGCTTG
CTGCTTGGGTGTTTTTAACTTTAGGTATCGTACTCGGTTCTTGGTGGGCTTATTATGAGCTTGGCTGGGGGGGCTGGTGG
TTCTGGGATCCAGTAGAAAACTCATCGTTTATGCCGTGGCTTGCTGGTACTGCATTGATTCACTCTCTTTCTGTGACAGA
AAAACGTGGTTCTTTCAAAGCTTGGACGGTATTACTTGCGATTTTAGCCTTTTCACTTTGTCTGCTCGGCACATTCTTAG
TTCGTTCTGGTATCTTAGTTTCAGTTCACGCATTTGCATCGGATCCAACTCGTGGTTTGTATATTTTGGCTTACCTCGTT
GTGGTAATTGGCGGTTCGCTTGCTCTCTATGCGTATAAAGGCAGTCAAATTCGTTCTCGTGATAATGCAGAACGCTATTC
ACGTGAAAGTATGTTGTTATTAAATAATATCTTATTAATGACCGCACTTTGCGTTGTATTCTTAGGAACGTTGTTACCAC
TTGTTCACAAACAACTTGGTTTAGGCTCTATTTCTATTGGTGCGCCGTTCTTTGATCAAATGTTCTTAATTATTATGACA
CCATTTGCATTATTGCTTGGTATTGGACCTTTAGTGAAATGGCGTAGAGACCAATTTTCTGCAATTCGTACGCCTGTTGT
TATCTGCGTATTTGTTATGCTGATTGCAGGTTTTGCGTTACCTTATTTCTTGCAAGATAAAATTACCGTGAGTTCAGTGC
TTGGTTCAATGATGACTGTGATTATTGCGTTACTTGCGCTTTATGAATTGCAACAACGTGCGACGCATCGTGAATCATTC
TTTGTTGGCGTACGCAAACTATCTCGTTCTCATTGGGGAATGATGTTAGCTCACTTAGGCGTAGCAATGACTGTTTGGGG
GATCGCGTTTAGCCAAAACTTTAGCGTAGAACGTGATGTGAGAATGAAAGTTGGCGAGAGCGCACAAATTGGTCGTTACG
ATTTTAAATTCACTGGTGTGACGGATGAAAATGGTCCAAACTATATTGGTGGAAAAGCTCAAATTGATATTTCTAAAGAT
GGGCAACCAGAGGCGAGTTTATTCGCAGAAAAACGTTTTTACACAGTAAGTCGGATGTCTATGACAGAAGCCGCTATTGC
TGGTGGTTTAACTCGTGACCTTTATGTGGCACTTGGCGAAAAACTTGAGGATAATTCTTGGGCGTTACGCTTATATTACA
AGCCATTTATTCGCTGGATTTGGATTGGCGGCTTATTTATGGCGTTAGGTGGATTGTTGTGCATGTTCGATCGACGCTAT
CGGTTTAATGTGTTGTTGAAGAAATAA

Upstream 100 bases:

>100_bases
TAGGCGAAAAAATGCAAAAAGTACATAAACCAATGGGAATTGAGGCAGCGGACTTAAAAGGCGAAAGCGCGCGTGATCGT
CAAGAAAAAGAAGGCGCAAA

Downstream 100 bases:

>100_bases
TTTTATTCTTGCCTTCCCCTGCTTGCGGGGGAAGGTGCCCGAAGGGCGGAAGGGGGATTACGTATCCCCCTCAGTCACTT
CGCGACAGCTCCCCCCATAA

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 648; Mature: 648

Protein sequence:

>648_residues
MIAELGNYALALSLAVSLMLAIFPLWGAEKGNAQLMALARPMTYGLFASLSIAFAALFYLFAVNDFSVQYIVNNSNTTLP
IYYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVLFTSNPFTRTFPDFPVDGKE
LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDSAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENSSFMPWLAGTALIHSLSVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
VVIGGSLALYAYKGSQIRSRDNAERYSRESMLLLNNILLMTALCVVFLGTLLPLVHKQLGLGSISIGAPFFDQMFLIIMT
PFALLLGIGPLVKWRRDQFSAIRTPVVICVFVMLIAGFALPYFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESF
FVGVRKLSRSHWGMMLAHLGVAMTVWGIAFSQNFSVERDVRMKVGESAQIGRYDFKFTGVTDENGPNYIGGKAQIDISKD
GQPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIWIGGLFMALGGLLCMFDRRY
RFNVLLKK

Sequences:

>Translated_648_residues
MIAELGNYALALSLAVSLMLAIFPLWGAEKGNAQLMALARPMTYGLFASLSIAFAALFYLFAVNDFSVQYIVNNSNTTLP
IYYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVLFTSNPFTRTFPDFPVDGKE
LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDSAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENSSFMPWLAGTALIHSLSVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
VVIGGSLALYAYKGSQIRSRDNAERYSRESMLLLNNILLMTALCVVFLGTLLPLVHKQLGLGSISIGAPFFDQMFLIIMT
PFALLLGIGPLVKWRRDQFSAIRTPVVICVFVMLIAGFALPYFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESF
FVGVRKLSRSHWGMMLAHLGVAMTVWGIAFSQNFSVERDVRMKVGESAQIGRYDFKFTGVTDENGPNYIGGKAQIDISKD
GQPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIWIGGLFMALGGLLCMFDRRY
RFNVLLKK
>Mature_648_residues
MIAELGNYALALSLAVSLMLAIFPLWGAEKGNAQLMALARPMTYGLFASLSIAFAALFYLFAVNDFSVQYIVNNSNTTLP
IYYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQEAVARVLGIMGIISVGFVLFVLFTSNPFTRTFPDFPVDGKE
LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDSAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENSSFMPWLAGTALIHSLSVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
VVIGGSLALYAYKGSQIRSRDNAERYSRESMLLLNNILLMTALCVVFLGTLLPLVHKQLGLGSISIGAPFFDQMFLIIMT
PFALLLGIGPLVKWRRDQFSAIRTPVVICVFVMLIAGFALPYFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESF
FVGVRKLSRSHWGMMLAHLGVAMTVWGIAFSQNFSVERDVRMKVGESAQIGRYDFKFTGVTDENGPNYIGGKAQIDISKD
GQPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGEKLEDNSWALRLYYKPFIRWIWIGGLFMALGGLLCMFDRRY
RFNVLLKK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family

Homologues:

Organism=Escherichia coli, GI1788524, Length=648, Percent_Identity=62.3456790123457, Blast_Score=808, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=588, Percent_Identity=37.4149659863946, Blast_Score=309, Evalue=3e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCMF_HAEIN (P45037)

Other databases:

- EMBL:   L42023
- PIR:   A64167
- RefSeq:   NP_439251.1
- GeneID:   950066
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1094
- NMPDR:   fig|71421.1.peg.1051
- TIGR:   HI_1094
- HOGENOM:   HBG663906
- OMA:   AEKRFYT
- ProtClustDB:   CLSK869930
- BioCyc:   HINF71421:HI_1094-MONOMER
- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568
- PRINTS:   PR01410
- PRINTS:   PR01411
- TIGRFAMs:   TIGR00353

Pfam domain/function: PF01578 Cytochrom_C_asm

EC number: NA

Molecular weight: Translated: 72354; Mature: 72354

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xdffd938)-; HASH(0xdb4a550)-; HASH(0xcf47f44)-; HASH(0xd118a38)-; HASH(0xd719040)-; HASH(0xc2a875c)-; HASH(0xdfec67c)-; HASH(0xdd95498)-; HASH(0xdade214)-; HASH(0xdc86cd4)-; HASH(0xdedfc34)-; HASH(0xdeea70c)-; HASH(0x96d0b34)-; HASH(0xb1ffa80)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAELGNYALALSLAVSLMLAIFPLWGAEKGNAQLMALARPMTYGLFASLSIAFAALFYL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
FAVNDFSVQYIVNNSNTTLPIYYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQE
HHHCCCEEEEEEECCCCEEEEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
AVARVLGIMGIISVGFVLFVLFTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCHHHHHCCHHHCCHHHHHH
YVGFSVAFAFAIASLMTGKLDSAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCEE
FWDPVENSSFMPWLAGTALIHSLSVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPTRGLYILAYLVVVIGGSLALYAYKGSQIRSRDNAERYSRESMLLLNNILLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
TALCVVFLGTLLPLVHKQLGLGSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFS
HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AIRTPVVICVFVMLIAGFALPYFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVGVRKLSRSHWGMMLAHLGVAMTVWGIAFSQNFSVERDVRMKVGESAQIGRYDFKFTGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCEEEEEECC
TDENGPNYIGGKAQIDISKDGQPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGE
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
KLEDNSWALRLYYKPFIRWIWIGGLFMALGGLLCMFDRRYRFNVLLKK
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEH
>Mature Secondary Structure
MIAELGNYALALSLAVSLMLAIFPLWGAEKGNAQLMALARPMTYGLFASLSIAFAALFYL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
FAVNDFSVQYIVNNSNTTLPIYYRLSAVWGSHEGSLLLWIWLLAVWSFAVALLSKHLPQE
HHHCCCEEEEEEECCCCEEEEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
AVARVLGIMGIISVGFVLFVLFTSNPFTRTFPDFPVDGKELNPMLQDVGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCHHHHHCCHHHCCHHHHHH
YVGFSVAFAFAIASLMTGKLDSAWARWSRPWTLAAWVFLTLGIVLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCEE
FWDPVENSSFMPWLAGTALIHSLSVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPTRGLYILAYLVVVIGGSLALYAYKGSQIRSRDNAERYSRESMLLLNNILLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
TALCVVFLGTLLPLVHKQLGLGSISIGAPFFDQMFLIIMTPFALLLGIGPLVKWRRDQFS
HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AIRTPVVICVFVMLIAGFALPYFLQDKITVSSVLGSMMTVIIALLALYELQQRATHRESF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVGVRKLSRSHWGMMLAHLGVAMTVWGIAFSQNFSVERDVRMKVGESAQIGRYDFKFTGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCEEEEEECC
TDENGPNYIGGKAQIDISKDGQPEASLFAEKRFYTVSRMSMTEAAIAGGLTRDLYVALGE
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
KLEDNSWALRLYYKPFIRWIWIGGLFMALGGLLCMFDRRYRFNVLLKK
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800