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The map label for this gene is ccmD

Identifier: 16273020

GI number: 16273020

Start: 1155891

End: 1156094

Strand: Direct

Name: ccmD

Synonym: HI1092

Alternate gene names: 16273020

Gene position: 1155891-1156094 (Clockwise)

Preceding gene: 16273019

Following gene: 16273021

Centisome position: 63.16

GC content: 37.25

Gene sequence:

>204_bases
ATGTTTTTCCAAACTTGGAGTGATTTTTTTAATATGGGTGGCTACGGTTTTTACGTATGGTTATCCTATGCAGTAAGTTT
AGTGGCAGTTATTGCCTTAATTGTTCAAAGCGTCAAGCAACGCAAGACAGTATTACAAAATGTCTTGCGTGAGAAACAAC
GCGAAGAACGTTTACAACAAGCAAATAAGGGGAATACACTATGA

Upstream 100 bases:

>100_bases
TATTGAAAGAAGATGCAAAACGTCCCTGGGTTAAAGCATTAGCTCAAACACTGAAATAAAGTGCGGTTAGTTTTTAGCGA
TTTTTTATAAGGAATATTTT

Downstream 100 bases:

>100_bases
ATCCAAGACGTAAATCCAGATTTAAATTAGTCATTTTTGTTGTGCTCGGCATTGCAATTGCAAGTGGATTGATGCTGTAT
GCGTTACGTCAAAATATTGA

Product: heme exporter protein D

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MFFQTWSDFFNMGGYGFYVWLSYAVSLVAVIALIVQSVKQRKTVLQNVLREKQREERLQQANKGNTL

Sequences:

>Translated_67_residues
MFFQTWSDFFNMGGYGFYVWLSYAVSLVAVIALIVQSVKQRKTVLQNVLREKQREERLQQANKGNTL
>Mature_67_residues
MFFQTWSDFFNMGGYGFYVWLSYAVSLVAVIALIVQSVKQRKTVLQNVLREKQREERLQQANKGNTL

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes (Potential)

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCMD_HAEIN (P45035)

Other databases:

- EMBL:   L42023
- PIR:   H64166
- RefSeq:   NP_439249.1
- GeneID:   950064
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1092
- NMPDR:   fig|71421.1.peg.1049
- TIGR:   HI_1092
- HOGENOM:   HBG757581
- OMA:   QFDSISE
- ProtClustDB:   CLSK869929
- BioCyc:   HINF71421:HI_1092-MONOMER
- GO:   GO:0006810
- InterPro:   IPR007078
- TIGRFAMs:   TIGR03141

Pfam domain/function: PF04995 CcmD

EC number: NA

Molecular weight: Translated: 7847; Mature: 7847

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xdaf5368)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFQTWSDFFNMGGYGFYVWLSYAVSLVAVIALIVQSVKQRKTVLQNVLREKQREERLQQ
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANKGNTL
HCCCCCH
>Mature Secondary Structure
MFFQTWSDFFNMGGYGFYVWLSYAVSLVAVIALIVQSVKQRKTVLQNVLREKQREERLQQ
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANKGNTL
HCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800