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The map label for this gene is ynfI [C]

Identifier: 16272976

GI number: 16272976

Start: 1108931

End: 1109542

Strand: Reverse

Name: ynfI [C]

Synonym: HI1044

Alternate gene names: 16272976

Gene position: 1109542-1108931 (Counterclockwise)

Preceding gene: 16272977

Following gene: 16272975

Centisome position: 60.63

GC content: 33.5

Gene sequence:

>612_bases
ATGCAAAATACTCTTCAACAAATTTCTATTTATGGGCGTTTACTCGGTGCAGTATTTTACTATGAGCCTAATGATGCACG
ACTTACTGATATTTTGACATTCTTTCGCCAACCAAATTGGATGCAAGAATGGGAAATTTCATTTGATGTAAAAACACATA
AAAAAATCACCGCACTTATTGAAAAAGGGCTGCAACAAAATATCACTGAACAATATCAGTATTTATTTATTGGTCCAAAT
GAATTACCTACGCCACCTTGGGGATCCGTATATCTTGATCCTGAATGTGTTATTTTTGGTAATTCTCTCTTAGCATTACG
CGATTTCTTACAACAACATCAAATCGCATTTCAAACACAACAAGATGAACCAGAAGATCATATTGGCTTAATGCTAATGC
TTGCTGCATATTTAGCAGAAAATCGACCGCACTTATTAACCAAATTTCTACGTGAACACTTCTTAACTTGGGCGTATCAT
TTCCTTGAACAACTAAGCAAAATAGAAAATTCTGATTTTTATCAAGCTCTTGCATTACTTACCATAAAAACTTTACAACA
ATGGCAAGTAGATTTACATATTAATGTACCGACAGTAAGATTTTATCGATAA

Upstream 100 bases:

>100_bases
GCGTATAGCATACGCCTCAATTTTTAGAAACGTTAATTAGTAATATTTAACTACCCCTCATATCCCCATTCACTAATGAC
AAATTGTTTTCGGAGATACT

Downstream 100 bases:

>100_bases
TGAAAAACGAAGCCTATTATCAGGCTTATTTAAGCCACCATCACATTTCTCGTAGAGGACTATTGCGTCATGTATTTCCA
GCTACAAAATCAACAATAGA

Product: twin-argninine leader-binding protein DmsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MQNTLQQISIYGRLLGAVFYYEPNDARLTDILTFFRQPNWMQEWEISFDVKTHKKITALIEKGLQQNITEQYQYLFIGPN
ELPTPPWGSVYLDPECVIFGNSLLALRDFLQQHQIAFQTQQDEPEDHIGLMLMLAAYLAENRPHLLTKFLREHFLTWAYH
FLEQLSKIENSDFYQALALLTIKTLQQWQVDLHINVPTVRFYR

Sequences:

>Translated_203_residues
MQNTLQQISIYGRLLGAVFYYEPNDARLTDILTFFRQPNWMQEWEISFDVKTHKKITALIEKGLQQNITEQYQYLFIGPN
ELPTPPWGSVYLDPECVIFGNSLLALRDFLQQHQIAFQTQQDEPEDHIGLMLMLAAYLAENRPHLLTKFLREHFLTWAYH
FLEQLSKIENSDFYQALALLTIKTLQQWQVDLHINVPTVRFYR
>Mature_203_residues
MQNTLQQISIYGRLLGAVFYYEPNDARLTDILTFFRQPNWMQEWEISFDVKTHKKITALIEKGLQQNITEQYQYLFIGPN
ELPTPPWGSVYLDPECVIFGNSLLALRDFLQQHQIAFQTQQDEPEDHIGLMLMLAAYLAENRPHLLTKFLREHFLTWAYH
FLEQLSKIENSDFYQALALLTIKTLQQWQVDLHINVPTVRFYR

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily

Homologues:

Organism=Escherichia coli, GI87081942, Length=196, Percent_Identity=37.7551020408163, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1787272, Length=181, Percent_Identity=26.5193370165746, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1044_HAEIN (P44102)

Other databases:

- EMBL:   L42023
- PIR:   C64019
- RefSeq:   NP_439203.1
- ProteinModelPortal:   P44102
- SMR:   P44102
- GeneID:   950592
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1044
- NMPDR:   fig|71421.1.peg.1004
- TIGR:   HI_1044
- HOGENOM:   HBG741966
- OMA:   PEDHIGL
- ProtClustDB:   PRK11621
- BioCyc:   HINF71421:HI_1044-MONOMER
- InterPro:   IPR020945

Pfam domain/function: PF02613 Nitrate_red_del

EC number: NA

Molecular weight: Translated: 24082; Mature: 24082

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNTLQQISIYGRLLGAVFYYEPNDARLTDILTFFRQPNWMQEWEISFDVKTHKKITALI
CCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCHHHEEEEECHHHHHHHHHH
EKGLQQNITEQYQYLFIGPNELPTPPWGSVYLDPECVIFGNSLLALRDFLQQHQIAFQTQ
HHHHHHHHHHHHEEEEECCCCCCCCCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHCCC
QDEPEDHIGLMLMLAAYLAENRPHLLTKFLREHFLTWAYHFLEQLSKIENSDFYQALALL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
TIKTLQQWQVDLHINVPTVRFYR
HHHHHHHHEEEEEEECCEEEEEC
>Mature Secondary Structure
MQNTLQQISIYGRLLGAVFYYEPNDARLTDILTFFRQPNWMQEWEISFDVKTHKKITALI
CCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCHHHEEEEECHHHHHHHHHH
EKGLQQNITEQYQYLFIGPNELPTPPWGSVYLDPECVIFGNSLLALRDFLQQHQIAFQTQ
HHHHHHHHHHHHEEEEECCCCCCCCCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHCCC
QDEPEDHIGLMLMLAAYLAENRPHLLTKFLREHFLTWAYHFLEQLSKIENSDFYQALALL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
TIKTLQQWQVDLHINVPTVRFYR
HHHHHHHHEEEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800