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The map label for this gene is ygcF [C]

Identifier: 162148726

GI number: 162148726

Start: 3042766

End: 3043401

Strand: Direct

Name: ygcF [C]

Synonym: GDI_2954

Alternate gene names: 162148726

Gene position: 3042766-3043401 (Clockwise)

Preceding gene: 162148725

Following gene: 162148727

Centisome position: 77.15

GC content: 69.97

Gene sequence:

>636_bases
ATGTCGTATGCGATCAAGGAGATGTTCGCGACCCTCCAGGGCGAGGGCGCGCATGCCGGCCGTGCCGCCGTGTTCTGCCG
CTTTGCCGGATGCAATCTCTGGTCGGGGCGGGAGGCCGATCGCGCCACGGCCGTCTGCCGTTTCTGCGATACCGACTTCG
TGGGCACGGATGGCACGGGCGGCGGCCGCTTCGCCGATGCCTCGTCGCTGGCCGACGCGATCGCCGCGACCTGGGAGGCA
CCGGGGCGCGAGCATGCCTTCGTCGTCTTCACCGGTGGCGAGCCGCTGCTGCAACTGGATGACGCGCTGATCGGGGCGGT
GCATGAACGGGGCTTCGAGATCGCGGTCGAGACCAACGGCACCCTGCCCGTCCCACCCGGCGTGGACTGGATCTGCGTCA
GCCCGAAGGCGGGCGCGGACCTGGTGCAGCGCACCGGGCACGAACTGAAGCTGGTCTATCCGCAGCCCGACCTGCTGCCC
GAGCGCGTGGCGGGGCTGGATTTCCGGCAATTCTGGCTGCAACCCATGGACGGGCCCGCCCAGGCCGCGAACACGGCGGC
GGCCGTCGCCTATTGCCGCGCCCACCCGCGCTGGCGCTTGTCGCTGCAAACCCACAAGCTGATCGGGATACCCTAG

Upstream 100 bases:

>100_bases
AGGCTGCTCGCGCGGCTGGGGATGCATACGAGTCTGGCCCAGGCCTGAACGCCGTCATTTAGCACTTGCGTCGCGCAGCG
GCGTGTCGGAAACCACCGCC

Downstream 100 bases:

>100_bases
AAATGGCCACATCCCTGACCCCCGCCGATCCGTTGCAGGAAGCCGCGATCGTGCTGTTTTCCGGCGGGCAGGATTCCGCG
ACCTGCCTGGCCTGGGCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: Organic Radical Activating; Organic Radical Activating-Like Protein; Radical SAM Domain Protein; Queuosine Biosynthesis Protein QueE; Organic Radical Activating Protein; Organic Radical Activating Protein; Radical SAM; Radical Sam Domain Protein; GntS Family Protein; Radical SAM Superfamily

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSYAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTGGGRFADASSLADAIAATWEA
PGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNGTLPVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLP
ERVAGLDFRQFWLQPMDGPAQAANTAAAVAYCRAHPRWRLSLQTHKLIGIP

Sequences:

>Translated_211_residues
MSYAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTGGGRFADASSLADAIAATWEA
PGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNGTLPVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLP
ERVAGLDFRQFWLQPMDGPAQAANTAAAVAYCRAHPRWRLSLQTHKLIGIP
>Mature_210_residues
SYAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTGGGRFADASSLADAIAATWEAP
GREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNGTLPVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLPE
RVAGLDFRQFWLQPMDGPAQAANTAAAVAYCRAHPRWRLSLQTHKLIGIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22621; Mature: 22490

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTG
CCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
GGRFADASSLADAIAATWEAPGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNG
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCC
TLPVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLPERVAGLDFRQFWLQPMDGPA
CCCCCCCCCEEEECCCCCHHHHHHCCCEEEEECCCCCCCHHHHCCCCHHHHHCCCCCCHH
QAANTAAAVAYCRAHPRWRLSLQTHKLIGIP
HHHHHHHHHHHHHCCCCEEEEEEEEEEECCC
>Mature Secondary Structure 
SYAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTG
CHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
GGRFADASSLADAIAATWEAPGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNG
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCC
TLPVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLPERVAGLDFRQFWLQPMDGPA
CCCCCCCCCEEEECCCCCHHHHHHCCCEEEEECCCCCCCHHHHCCCCHHHHHCCCCCCHH
QAANTAAAVAYCRAHPRWRLSLQTHKLIGIP
HHHHHHHHHHHHHCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA