Click here to switch to the map view.

The map label for this gene is ygcB [H]

Identifier: 162147994

GI number: 162147994

Start: 2261622

End: 2264321

Strand: Reverse

Name: ygcB [H]

Synonym: GDI_2210

Alternate gene names: 162147994

Gene position: 2264321-2261622 (Counterclockwise)

Preceding gene: 162147995

Following gene: 162147993

Centisome position: 57.41

GC content: 64.78

Gene sequence:

>2700_bases
ATGGCCATGCGTTCGAACGGACTGGAATTCTTCTGGGGAAAAGCGCGTGCTGTTCCAGCGGAAGGCGCCATGATCGGGCC
GGTCATGCACCCGCTCATCGCGCATATGCTCGACGTCGCCGCTGTCGCGGTCCTTCTGCCCGAAAATGCGAAGTGCGGCC
TTGACCGTCGTCAGCTTGGCCTGCTGGTCGCATTACACGATATCGGCAAGCTCATGCCTGCCTTCCAGGCAAAGGTCGAA
ATATGCTGGCCTGAAGCCATCCTGGGGGGCTTTCCGGTAGAACTGGTCCCATGTTTTCACGATGCGGCGGGATTGGCGCT
GCTGGATCTCATGGTCGATGACGTCCTTGCCGCATTGTTCGCGAACGGCCAGGACGGAAAATGTTGGCGGCTGACCCATA
AACTGAAGCTTCTGCGTGCCGTCGCAGGCCATCATGGGCAGCCTGTATCGGCCCAGAACAGGAACACGCTGGCGCCTGAC
ACGATCGAACGTGCCCGGACACTCGTCGCCCTTCTGTTCGACGTGTTCCGGCCGCCGCCTATCCTGCGTCCCGGAGATGA
TACGCTCAGGCGACTCGAATGGATGCTGGCGCGGGTCACTATCCAGGCGGACTGGATCGGCTCGCAACAGGAATGGTTTC
CTTATGTCACGCCGGAAAGCGTGGCCGATCCATCGGGATATTTCTGGAACCACGCGCTGCCCCGGGCACAGTCGGCCATC
CACCGGGCGGGGCTGGGACCGATGGTGGGGGCGCCGTTCGCGGGCACGGCCGGGCTGTTTGACCATATCCGCGAGCCCTC
GCCGATGCAGGCGTTGCTCGAAACCCTGCCGGTGCCGTCCGGGCCGGTGCTGGTGGTTATCGAGGATGCGACCGGCAGCG
GAAAGACCGAGGCCGCGCTGGTCATGGCCCAGAGGCTGATCGCGGCAGGACGGAGTTCGGGACTGTTCGTTGCCCTGCCG
ACAATGGCCACGGCGAACGCCATGTATGACCGGCTGGCGGCGGCCTATCGCCGGCTCTTCCAGCCGTCCGCGCGCCCGTC
ACTGGCGCTGGCCCATGGTCGTGCGCGGCTGGACGAGCGATTTGCCGCGGCATTGGCCCCCGATGACGGATCGGACGCAT
TCCCCGATGCCCGGATCATGGATGAAACGGCGGAAGCCTATTGCGCGGCGTGGCTGGGGAGCGAATCACGGCGTGCCCTG
ATGGCTCAGGTAGGGGTGGGCACGATTGACCAGGCGCTGATGGCCGTATTGCCCGTACGCTTCGCGACGGTGCGGCACGC
CGGTCTGGCGGGCAAGATTCTTATCGTGGACGAATGCCACGCCTTCGATCCCTATATGCGTCGGGAAATGGTGGCCTTGC
TCCGGTTCCACGCGGCAATGGGTGGGTCGGCTTTGCTGCTGTCTGCCACGTTGACGCAGCGGATTCGGCAGGAATTGACG
AACGCCTTCCGAAGCGGTTTGGATACGGTAGACCCTGCGCCCTTGTCGGGCACGGCCTATCCTCTAGTCACGCTCGTCGG
CAAAGCTGGGGCCGAAGAATACCCCTGCGCGTTGCGGCCTGGCTTGGCGCGTAGCATCGCTGTCCGACGCTTGGCCGACA
CCGATGCCGCCTCCCGCGAAGTCATCGCCGCCGCCGCCGCCGGAGCGGCGGTCGCATGGATTCGCAACACGGTGGACGAG
GTGATTGCAACCGCCCGATTCCTTCGTGCGCAGGGCGTTGAGTTACTGGTCTTTCATGCGCGTTTCGCCATGGTGGACCG
CCTGGCGATCGAGCGTGACGTGCTTGCGCGGTTCGGAAAGAACAAGGAAACGACGGGGCGTTCCGCCGTGCTGGTGGCTT
CGCAGGTCATCGAACAAAGCCTCGACCTGGATTTCGATGTGCTCGTGACCGACCTCGCGCCGATGGACCAGGTGATCCAG
CGCGCCGGGCGGTTGCGCCGCCATGACCGCATCGCACGACCTGTCGATCGGGAGGAACTGCTCGTCATATCGCCCGAGCC
GGTCGCTGAACCCGATCCATCATGGGTCAGGCGCGTGTTGCCCGGAACGGCCGCGGTGTACCGCGATCCGGCGTTGCTCT
GGCGGACGGCCCGGACCCTGTTCAGGTACGGACGGATCGAAAGTCCGGGAAGGATCAGGGCCCTGATCGAGGAGGCAGGT
GACGCCGACGCTCCGGGCGCGGTCCCGGACGGGCTGGCGGCGGGCAGCACGGACGCGATGGGTAAAGCCCTTGCGGCCGG
CTTCGCTGCAGACCGGAATGTCCTGTCGTTCGATGCAGGATACGTGGCGGACGGCGCGCTGTGGGAGCGTGAAGCCAGGA
CACCGACCCGGCTGGAGGATCTGCCGTACGTGACCGTCAGGCTTGCGGTCATGCAGGACGGGAGAGTGCTGCCCTGGGCC
GCGAAAATCGACCCCGGCCTTGCCTGCGCGGGCGAGCATCGGCGGGCATGGGCGCTGTCCGAGGTGTCGGTGGCGCAATA
TCGTCTGGCCCGTTGTCCTCCTCCACCTGGTTTGGAGCGCGTCGTGGCGGCCGCGCGAGCGGAGTGGCCCCGCTGGGAAC
GGGAGGATGAAAGTAGCGTTCTGCTGCTCATACTTCAGAAAATGGAAGAAGGTTGGCGTGGGGCGGGGCAGATAGAGACC
GGTCATGAGGTTGTGATCGGTTACGATCGGACTTATGGATTGGAGGTTGTTCCCGCATAG

Upstream 100 bases:

>100_bases
ACCTGCTGCCCCTGATGGGCCATGACCGGGTGGCGGAACGGCTACGCATCGCCGCGCGCTGAACAGGATGCCCGCGGCGT
CCCGGGCCGCGTGAGGGGCC

Downstream 100 bases:

>100_bases
CGGGATGGACCGTTGTGATGGAGGCTTCGCTAGAGATAGCCACCTTTTCCCCGCTACCGCGGGGATATTTTAACATGCTG
TAAAAATTGACTATCCAGCT

Product: helicase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 899; Mature: 898

Protein sequence:

>899_residues
MAMRSNGLEFFWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLLPENAKCGLDRRQLGLLVALHDIGKLMPAFQAKVE
ICWPEAILGGFPVELVPCFHDAAGLALLDLMVDDVLAALFANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQNRNTLAPD
TIERARTLVALLFDVFRPPPILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFPYVTPESVADPSGYFWNHALPRAQSAI
HRAGLGPMVGAPFAGTAGLFDHIREPSPMQALLETLPVPSGPVLVVIEDATGSGKTEAALVMAQRLIAAGRSSGLFVALP
TMATANAMYDRLAAAYRRLFQPSARPSLALAHGRARLDERFAAALAPDDGSDAFPDARIMDETAEAYCAAWLGSESRRAL
MAQVGVGTIDQALMAVLPVRFATVRHAGLAGKILIVDECHAFDPYMRREMVALLRFHAAMGGSALLLSATLTQRIRQELT
NAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAEEYPCALRPGLARSIAVRRLADTDAASREVIAAAAAGAAVAWIRNTVDE
VIATARFLRAQGVELLVFHARFAMVDRLAIERDVLARFGKNKETTGRSAVLVASQVIEQSLDLDFDVLVTDLAPMDQVIQ
RAGRLRRHDRIARPVDREELLVISPEPVAEPDPSWVRRVLPGTAAVYRDPALLWRTARTLFRYGRIESPGRIRALIEEAG
DADAPGAVPDGLAAGSTDAMGKALAAGFAADRNVLSFDAGYVADGALWEREARTPTRLEDLPYVTVRLAVMQDGRVLPWA
AKIDPGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLERVVAAARAEWPRWEREDESSVLLLILQKMEEGWRGAGQIET
GHEVVIGYDRTYGLEVVPA

Sequences:

>Translated_899_residues
MAMRSNGLEFFWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLLPENAKCGLDRRQLGLLVALHDIGKLMPAFQAKVE
ICWPEAILGGFPVELVPCFHDAAGLALLDLMVDDVLAALFANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQNRNTLAPD
TIERARTLVALLFDVFRPPPILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFPYVTPESVADPSGYFWNHALPRAQSAI
HRAGLGPMVGAPFAGTAGLFDHIREPSPMQALLETLPVPSGPVLVVIEDATGSGKTEAALVMAQRLIAAGRSSGLFVALP
TMATANAMYDRLAAAYRRLFQPSARPSLALAHGRARLDERFAAALAPDDGSDAFPDARIMDETAEAYCAAWLGSESRRAL
MAQVGVGTIDQALMAVLPVRFATVRHAGLAGKILIVDECHAFDPYMRREMVALLRFHAAMGGSALLLSATLTQRIRQELT
NAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAEEYPCALRPGLARSIAVRRLADTDAASREVIAAAAAGAAVAWIRNTVDE
VIATARFLRAQGVELLVFHARFAMVDRLAIERDVLARFGKNKETTGRSAVLVASQVIEQSLDLDFDVLVTDLAPMDQVIQ
RAGRLRRHDRIARPVDREELLVISPEPVAEPDPSWVRRVLPGTAAVYRDPALLWRTARTLFRYGRIESPGRIRALIEEAG
DADAPGAVPDGLAAGSTDAMGKALAAGFAADRNVLSFDAGYVADGALWEREARTPTRLEDLPYVTVRLAVMQDGRVLPWA
AKIDPGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLERVVAAARAEWPRWEREDESSVLLLILQKMEEGWRGAGQIET
GHEVVIGYDRTYGLEVVPA
>Mature_898_residues
AMRSNGLEFFWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLLPENAKCGLDRRQLGLLVALHDIGKLMPAFQAKVEI
CWPEAILGGFPVELVPCFHDAAGLALLDLMVDDVLAALFANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQNRNTLAPDT
IERARTLVALLFDVFRPPPILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFPYVTPESVADPSGYFWNHALPRAQSAIH
RAGLGPMVGAPFAGTAGLFDHIREPSPMQALLETLPVPSGPVLVVIEDATGSGKTEAALVMAQRLIAAGRSSGLFVALPT
MATANAMYDRLAAAYRRLFQPSARPSLALAHGRARLDERFAAALAPDDGSDAFPDARIMDETAEAYCAAWLGSESRRALM
AQVGVGTIDQALMAVLPVRFATVRHAGLAGKILIVDECHAFDPYMRREMVALLRFHAAMGGSALLLSATLTQRIRQELTN
AFRSGLDTVDPAPLSGTAYPLVTLVGKAGAEEYPCALRPGLARSIAVRRLADTDAASREVIAAAAAGAAVAWIRNTVDEV
IATARFLRAQGVELLVFHARFAMVDRLAIERDVLARFGKNKETTGRSAVLVASQVIEQSLDLDFDVLVTDLAPMDQVIQR
AGRLRRHDRIARPVDREELLVISPEPVAEPDPSWVRRVLPGTAAVYRDPALLWRTARTLFRYGRIESPGRIRALIEEAGD
ADAPGAVPDGLAAGSTDAMGKALAAGFAADRNVLSFDAGYVADGALWEREARTPTRLEDLPYVTVRLAVMQDGRVLPWAA
KIDPGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLERVVAAARAEWPRWEREDESSVLLLILQKMEEGWRGAGQIETG
HEVVIGYDRTYGLEVVPA

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=740, Percent_Identity=33.5135135135135, Blast_Score=290, Evalue=3e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006483
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 97390; Mature: 97259

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRSNGLEFFWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLLPENAKCGLDRRQLG
CCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LLVALHDIGKLMPAFQAKVEICWPEAILGGFPVELVPCFHDAAGLALLDLMVDDVLAALF
HHHHHHHHHHHHHHHHHHEEEECHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
ANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQNRNTLAPDTIERARTLVALLFDVFRPPP
CCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
ILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFPYVTPESVADPSGYFWNHALPRAQSAI
CCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHH
HRAGLGPMVGAPFAGTAGLFDHIREPSPMQALLETLPVPSGPVLVVIEDATGSGKTEAAL
HHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH
VMAQRLIAAGRSSGLFVALPTMATANAMYDRLAAAYRRLFQPSARPSLALAHGRARLDER
HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHH
FAAALAPDDGSDAFPDARIMDETAEAYCAAWLGSESRRALMAQVGVGTIDQALMAVLPVR
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
FATVRHAGLAGKILIVDECHAFDPYMRREMVALLRFHAAMGGSALLLSATLTQRIRQELT
HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
NAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAEEYPCALRPGLARSIAVRRLADTDAASRE
HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
VIAAAAAGAAVAWIRNTVDEVIATARFLRAQGVELLVFHARFAMVDRLAIERDVLARFGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCC
NKETTGRSAVLVASQVIEQSLDLDFDVLVTDLAPMDQVIQRAGRLRRHDRIARPVDREEL
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCE
LVISPEPVAEPDPSWVRRVLPGTAAVYRDPALLWRTARTLFRYGRIESPGRIRALIEEAG
EEECCCCCCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
DADAPGAVPDGLAAGSTDAMGKALAAGFAADRNVLSFDAGYVADGALWEREARTPTRLED
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCCCCCHHC
LPYVTVRLAVMQDGRVLPWAAKIDPGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLER
CCEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
VVAAARAEWPRWEREDESSVLLLILQKMEEGWRGAGQIETGHEVVIGYDRTYGLEVVPA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEECC
>Mature Secondary Structure 
AMRSNGLEFFWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLLPENAKCGLDRRQLG
CCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LLVALHDIGKLMPAFQAKVEICWPEAILGGFPVELVPCFHDAAGLALLDLMVDDVLAALF
HHHHHHHHHHHHHHHHHHEEEECHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
ANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQNRNTLAPDTIERARTLVALLFDVFRPPP
CCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
ILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFPYVTPESVADPSGYFWNHALPRAQSAI
CCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHH
HRAGLGPMVGAPFAGTAGLFDHIREPSPMQALLETLPVPSGPVLVVIEDATGSGKTEAAL
HHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH
VMAQRLIAAGRSSGLFVALPTMATANAMYDRLAAAYRRLFQPSARPSLALAHGRARLDER
HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHH
FAAALAPDDGSDAFPDARIMDETAEAYCAAWLGSESRRALMAQVGVGTIDQALMAVLPVR
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
FATVRHAGLAGKILIVDECHAFDPYMRREMVALLRFHAAMGGSALLLSATLTQRIRQELT
HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
NAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAEEYPCALRPGLARSIAVRRLADTDAASRE
HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
VIAAAAAGAAVAWIRNTVDEVIATARFLRAQGVELLVFHARFAMVDRLAIERDVLARFGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCC
NKETTGRSAVLVASQVIEQSLDLDFDVLVTDLAPMDQVIQRAGRLRRHDRIARPVDREEL
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCE
LVISPEPVAEPDPSWVRRVLPGTAAVYRDPALLWRTARTLFRYGRIESPGRIRALIEEAG
EEECCCCCCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
DADAPGAVPDGLAAGSTDAMGKALAAGFAADRNVLSFDAGYVADGALWEREARTPTRLED
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCCCCCHHC
LPYVTVRLAVMQDGRVLPWAAKIDPGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLER
CCEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
VVAAARAEWPRWEREDESSVLLLILQKMEEGWRGAGQIETGHEVVIGYDRTYGLEVVPA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 2005873; 7984428 [H]