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The map label for this gene is rsmB [H]

Identifier: 162147596

GI number: 162147596

Start: 1844886

End: 1846127

Strand: Direct

Name: rsmB [H]

Synonym: GDI_1812

Alternate gene names: 162147596

Gene position: 1844886-1846127 (Clockwise)

Preceding gene: 162147595

Following gene: 162147597

Centisome position: 46.78

GC content: 73.03

Gene sequence:

>1242_bases
ATGGAGGCCACGCCCCGTCGCCCGGCGGATGCCGTCGCCAATGCCTTCTTCCGTGAACGACGCTATATCGGTGGCGGAGA
CAGGCGGGCGATATCGGCGCGTGTCTGGACCGTGCTGCGTCACTGGCGCCATCTGGCCTGGTGGCTGGATCGCGCGGGGG
CGGCGGCCACGCCCCGGGCGCGGCTGATCGCGGCGCTGGCGCTGATGCCCCAGCCCGGCGAGGCGCCGCAGGACCTGTTC
GTGTCCCAGGACCGCTACGCGCCGCAGCCCCTGTCGGCGGCGGAACGGGACCTGGCCACCCGGCTGCGCGGCCAGGCCAT
GGTCCACCCCGACATGCCGCGTGCGGTCCGGCTGGAAGTGCCGGACTGGCTGCTGCCGCGGCTGGAGGAAACGTTCGGCG
CCGACCTGGATGCCGAAGTGGCGGCGCTGGCCGGCGAGGCGACGCTGGACCTGCGGGTGAACCTGCTGAAGACCACGCGG
GCCGAGGCCGCGCGCCTGCTGGCCGCCGACGGCATCATGGCCGAACCGACGGGCCTGTCCCCCTGGGGCCTGCGCGTGCC
CGGGCGGCAGCCGGTGACGGCCACGGCGGCCTTCAAGTCCGGACTGGTGGAAATCCAGGACGAAGGCAGCCAGATCGTGG
TGGCGGCCGCCGACGCGCGGCCCGGCATGCGGGTGCTGGATTACTGCGCGGGCGCCGCCGGCAAGACGCTGGGCATGGCG
ATGACCATGGAAAATCGCGGCCATATCGTGGCCTGCGACGTCTCCGAACCCCGGCTGGAGGGCGCGGTGCGCCGCCTGCG
CCGCGCGGGCGTCCATAATGCGGAACGGCACCTGCTGGTCCCGGGCGACCGCTGGGCCCGGCGGCGGGCCGCCAGCTTCG
ACCGGGTGCTGGTCGATGCCCCCTGCACCGGAACCGGGACATGGCGGCGCAATCCCGACGCGCGGCTGCGCCTGACCGAG
CAGGACCTGGCCGAACTGATGGCCAAGCAGGCCGACATCCTGGCGACCGCCTCCGCCCTGGTGCGGCCGGGCGGGCGTCT
GGTCTATGCCACCTGTTCGATCCTGCGCGAGGAGAACCAGGACCGGATCGCGTCGTTCCTGCGCGCCTCGCCGCATTTCC
GCCGGGCGGAAACGGTGCCTGACCTGGCGCCCGATCTGGCACAGGATGGGATGATCGCGCTGTCACCCTTGCGGCACGGG
ACCGACGGATTCTTCGCCGCGATCCTGGAACGCACGGCCTGA

Upstream 100 bases:

>100_bases
GTGGCGATCACGCGCGAGGCGCCGAATTACCGCCGCGACTGATAGGACCGACATGACCCCCAGTGCGCGGCTCGCCGCCG
CGATCGATCTGCTGTCGGCG

Downstream 100 bases:

>100_bases
ACAAAAAAACGTTCTTTTTTAATGACAAAGTGGTCGATCGTTCCGGATTGTCGCTGTCCCGGCCCGCGTTGTAATCTGAC
GGATATCAAGGCGGCCCAAC

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MEATPRRPADAVANAFFRERRYIGGGDRRAISARVWTVLRHWRHLAWWLDRAGAAATPRARLIAALALMPQPGEAPQDLF
VSQDRYAPQPLSAAERDLATRLRGQAMVHPDMPRAVRLEVPDWLLPRLEETFGADLDAEVAALAGEATLDLRVNLLKTTR
AEAARLLAADGIMAEPTGLSPWGLRVPGRQPVTATAAFKSGLVEIQDEGSQIVVAAADARPGMRVLDYCAGAAGKTLGMA
MTMENRGHIVACDVSEPRLEGAVRRLRRAGVHNAERHLLVPGDRWARRRAASFDRVLVDAPCTGTGTWRRNPDARLRLTE
QDLAELMAKQADILATASALVRPGGRLVYATCSILREENQDRIASFLRASPHFRRAETVPDLAPDLAQDGMIALSPLRHG
TDGFFAAILERTA

Sequences:

>Translated_413_residues
MEATPRRPADAVANAFFRERRYIGGGDRRAISARVWTVLRHWRHLAWWLDRAGAAATPRARLIAALALMPQPGEAPQDLF
VSQDRYAPQPLSAAERDLATRLRGQAMVHPDMPRAVRLEVPDWLLPRLEETFGADLDAEVAALAGEATLDLRVNLLKTTR
AEAARLLAADGIMAEPTGLSPWGLRVPGRQPVTATAAFKSGLVEIQDEGSQIVVAAADARPGMRVLDYCAGAAGKTLGMA
MTMENRGHIVACDVSEPRLEGAVRRLRRAGVHNAERHLLVPGDRWARRRAASFDRVLVDAPCTGTGTWRRNPDARLRLTE
QDLAELMAKQADILATASALVRPGGRLVYATCSILREENQDRIASFLRASPHFRRAETVPDLAPDLAQDGMIALSPLRHG
TDGFFAAILERTA
>Mature_413_residues
MEATPRRPADAVANAFFRERRYIGGGDRRAISARVWTVLRHWRHLAWWLDRAGAAATPRARLIAALALMPQPGEAPQDLF
VSQDRYAPQPLSAAERDLATRLRGQAMVHPDMPRAVRLEVPDWLLPRLEETFGADLDAEVAALAGEATLDLRVNLLKTTR
AEAARLLAADGIMAEPTGLSPWGLRVPGRQPVTATAAFKSGLVEIQDEGSQIVVAAADARPGMRVLDYCAGAAGKTLGMA
MTMENRGHIVACDVSEPRLEGAVRRLRRAGVHNAERHLLVPGDRWARRRAASFDRVLVDAPCTGTGTWRRNPDARLRLTE
QDLAELMAKQADILATASALVRPGGRLVYATCSILREENQDRIASFLRASPHFRRAETVPDLAPDLAQDGMIALSPLRHG
TDGFFAAILERTA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=320, Percent_Identity=31.875, Blast_Score=121, Evalue=2e-27,
Organism=Homo sapiens, GI76150623, Length=320, Percent_Identity=31.875, Blast_Score=121, Evalue=2e-27,
Organism=Homo sapiens, GI32698918, Length=216, Percent_Identity=26.8518518518519, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI23199998, Length=265, Percent_Identity=29.0566037735849, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI270288818, Length=265, Percent_Identity=29.0566037735849, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI270288816, Length=266, Percent_Identity=29.3233082706767, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI8922322, Length=266, Percent_Identity=29.3233082706767, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI301336155, Length=186, Percent_Identity=29.0322580645161, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI39995082, Length=186, Percent_Identity=29.0322580645161, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI11545785, Length=221, Percent_Identity=26.6968325791855, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI2367212, Length=295, Percent_Identity=32.5423728813559, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081985, Length=306, Percent_Identity=30.718954248366, Blast_Score=119, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17536757, Length=313, Percent_Identity=31.629392971246, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25143471, Length=175, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324268, Length=237, Percent_Identity=30.8016877637131, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319447, Length=182, Percent_Identity=31.3186813186813, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI22024126, Length=286, Percent_Identity=31.8181818181818, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24668781, Length=189, Percent_Identity=31.2169312169312, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19920494, Length=154, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356513, Length=189, Percent_Identity=31.2169312169312, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355201, Length=177, Percent_Identity=30.5084745762712, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 45143; Mature: 45143

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEATPRRPADAVANAFFRERRYIGGGDRRAISARVWTVLRHWRHLAWWLDRAGAAATPRA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
RLIAALALMPQPGEAPQDLFVSQDRYAPQPLSAAERDLATRLRGQAMVHPDMPRAVRLEV
HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCEEEECC
PDWLLPRLEETFGADLDAEVAALAGEATLDLRVNLLKTTRAEAARLLAADGIMAEPTGLS
CHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHCCCEECCCCCC
PWGLRVPGRQPVTATAAFKSGLVEIQDEGSQIVVAAADARPGMRVLDYCAGAAGKTLGMA
CCCEECCCCCCCCHHHHHHCCCEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEE
MTMENRGHIVACDVSEPRLEGAVRRLRRAGVHNAERHLLVPGDRWARRRAASFDRVLVDA
EEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEC
PCTGTGTWRRNPDARLRLTEQDLAELMAKQADILATASALVRPGGRLVYATCSILREENQ
CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCH
DRIASFLRASPHFRRAETVPDLAPDLAQDGMIALSPLRHGTDGFFAAILERTA
HHHHHHHHCCCCCHHHCCCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MEATPRRPADAVANAFFRERRYIGGGDRRAISARVWTVLRHWRHLAWWLDRAGAAATPRA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
RLIAALALMPQPGEAPQDLFVSQDRYAPQPLSAAERDLATRLRGQAMVHPDMPRAVRLEV
HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCEEEECC
PDWLLPRLEETFGADLDAEVAALAGEATLDLRVNLLKTTRAEAARLLAADGIMAEPTGLS
CHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHCCCEECCCCCC
PWGLRVPGRQPVTATAAFKSGLVEIQDEGSQIVVAAADARPGMRVLDYCAGAAGKTLGMA
CCCEECCCCCCCCHHHHHHCCCEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEE
MTMENRGHIVACDVSEPRLEGAVRRLRRAGVHNAERHLLVPGDRWARRRAASFDRVLVDA
EEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEC
PCTGTGTWRRNPDARLRLTEQDLAELMAKQADILATASALVRPGGRLVYATCSILREENQ
CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCH
DRIASFLRASPHFRRAETVPDLAPDLAQDGMIALSPLRHGTDGFFAAILERTA
HHHHHHHHCCCCCHHHCCCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]