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The map label for this gene is secD [H]

Identifier: 162147519

GI number: 162147519

Start: 1755184

End: 1757694

Strand: Reverse

Name: secD [H]

Synonym: GDI_1735

Alternate gene names: 162147519

Gene position: 1757694-1755184 (Counterclockwise)

Preceding gene: 162147520

Following gene: 162147517

Centisome position: 44.56

GC content: 68.1

Gene sequence:

>2511_bases
ATGATGTATTACAGCCGGCTCAAATTGGCCTCGGTCGTGGCCGTATGTCTTCTGGGAATGTTGCTCTGCCTTCCCAACGC
CCTGCGCCAGCCCGCCCCCGCCGTGCCGTGGCGCCAGATCCACCTGGGGCTGGACCTGCGCGGCGGGTCGTACCTGCTGA
TGCAGGTGGACATGAACAGCATCCGCGCCGACCGCCTGCAGACCCTGGCGGACGGCACGCGCCAGGCGCTGCTGGGCGCC
GGCCTGGGCTACCGTGACATCGCGACCGACGCGCAGGCCGGAACCGTGACCTTCACGCCCCGCGAGCCCGCCGAGTCCGA
TGCGGACCTGAAGACCCTGCGCGCCATGCCGAAGGCGGTGGCCGACGAATTTTCGGTCGATCGCCGGCCTGACGGCAGCA
TCGCCATCACGCTGTCGCCCGTCGCCATGCGCCAGCGCGCGGCCGAGGCCGTGACCCAATCGATCGAAATCGTGCGCCGC
CGCATCGACGCGACCGGCGCGGTCGATCCCGAGATCACCCGCCAGGGCGAGGATCGCATCATCGTCGAACTGCCCGGCAT
CAGCGACCCCGAGCATGTCAAGAAGCTGCTGGGCACCACGGCGAAGATGACCTTCCACATGGTGCAGGAAAACGCCCTGG
GCTCTGCCGTGCCCGGTCCCGGCGTCACCCTGCTGCCGATGCTGAACGCGCCGGACCAGAAGCTGCCGGTCAGGGACCAT
GTCGATGTCGACGGGTCCGACCTGACCAACGCGGGGGCGGCCATCGACCAGCAGAGCGGCGAATGGGCGGTCAATTTCAC
CTTCGATTCCGCCGGCGCGCGGGCCTTCGCCGCGACGACGCAGGCCAATGTCGGCCGTCGCTTCGCCATCGTGCTGGACA
ACAAGGTGGTCCAGGCCCCGGTCATCCGCACCGCCATTACCGGCGGCAACGGCCAGATCACCGGCGGCTTCGACGCGCAG
TCGGCTACCGACCTGGCGCTGCTGCTGCGGGCCGGCGCGCTGCCGGCGCCGCTGTCGGTCATCGAACAGCGTTCGATCGG
CCCGTCGCTGGGCGCCGATTCGATCCGCGCGGGCATGATCAGCCTGGGCGTGGGCTTCGCGCTGGTGATCGTGTTCATGG
CGCTGTTCTACGGCCGGTTCGGCTGGTACGCGAACGCCGCCCTGCTGGCCAACCTGGTCCTGATGGTGGCCGTGCTGTCG
CTGTTCCAGGCCACGCTGACGCTGCCCGGCATGGCCGGCATGCTGCTGACCCTGGGCATGGCGGTGGATGCGAACATCCT
GATCAACGAACGCGTGCGCGAGGAAGTCGGCCGTGGCCGCACCCCGCTGGCGGCGATGCAGACCGGTTTCGAACGCGCGA
CCTCCACCATCCTGGACAGCAACGCCACCGCTTTGCTGGCGCATATCATGCTGTTCGTCTTCGGCACCGGCCCGGTCCAG
AATTTCGCCCTGACGATCATGATCGGCATCGCGACCACGCTGTTCACCACCCTGCTGCTGTCGCGGATGCTGATGGTGCG
CTGGTACGCCCGCACCCGTCCCACCGCCCTTCCAGTTTGGAGGCGCATCATGTTCTCTCGTCCCCTCCTGCGCTTCGTGC
CCAAGGGCACCCGGATCAACTTCATGCGCGGCCGTTTCGTCGGCCTAGCGACCTCCGCCGTGCTGTCGATCGCATCCGTG
ATCCTGTTCCTGCATCCCGGCCTGACGCTGGGGCTGGACTTCCGGGGCGGCATCGTGGTCGAGGCCCGGACCCAGGGCCC
GGCCGATTTCGGCAAGATCCGCGCGGCCCTGGCCGCCCAGCATGTCGAGGCCGCGGGCGTGCAGTCCTTCGGCGCGCCCG
ACGACGTGCTGATCCGCCTGGACGCGCCCCCCGCCGGCGACCACGACCGCGAGGCCCATACCCAGGCCATGGTGGATTCC
GTGCGCCACGCCGTGGCCACCCTGCCCGGCGCGCAGGTGCTGCGGGCCGACGCGGTGGGCGCGTCGGTGTCGGCCGAACT
GTTCCGCAACGGCATGCTGGCCCTGGGCATCAGCCTGCTGATGATCCTGGGCTATATCTGGTTCCGGTTCGAATGGGAGT
TCGCGGTCAGCGCGGTCGTCACCCTGGTGCTGGACCTGACCAAGACCATCGGCTTCCTGGTGCTGACGCATTTCGAATTC
GACCTGGTGATGGTCGCGGCCATCCTGACGATCCTGGGCTATTCCACCAACGACAAGGTGGTTGTGTACGACCGGGTGCG
GGAAAACCTGCGCAAATACCGCACCATGCCCCTGGCCGAGCTGATCGACCTGTCGATCAATGAAACACTGGGCCGCACGC
TGGGCACGTCCTCGACGGTCTTCCTGGCGGCGCTGCCGCTGGCGCTGTTCGGCGCCAGCCTGTCCAGCTTCGCCTGGGTG
ATGCTGTTCGGGATCGTGGTCGGGACATCGTCCTCGATCTTTATCGCGGCGCCGCTCCTGCTTCTACTGGGCGAGAAGCG
ACTTCGGCGCGACGCGCGTCCGGCGCGCTGA

Upstream 100 bases:

>100_bases
CCTGCCAGGCGGTTGCATCCTGCGCCACGGCCCGGCATGTTCCCGCCCCACGAGAACTGGGAGCCGGCTGGGCCGGGCGT
AAGGAGCACCCCTTTCAGTC

Downstream 100 bases:

>100_bases
CCGGCGCCGGCAGGCAGGCGGCGGTCGATCCGCTGTCGGCCTGCCCGACGCAGGCCAGCATCACTGGATGGCGACCTGGA
CCCGGCGCTCGCCGCCCTCG

Product: bifunctional preprotein translocase subunit SecD/SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 836; Mature: 836

Protein sequence:

>836_residues
MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNSIRADRLQTLADGTRQALLGA
GLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAVADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRR
RIDATGAVDPEITRQGEDRIIVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH
VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAPVIRTAITGGNGQITGGFDAQ
SATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMISLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLS
LFQATLTLPGMAGMLLTLGMAVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ
NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRINFMRGRFVGLATSAVLSIASV
ILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQHVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDS
VRHAVATLPGAQVLRADAVGASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF
DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTVFLAALPLALFGASLSSFAWV
MLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR

Sequences:

>Translated_836_residues
MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNSIRADRLQTLADGTRQALLGA
GLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAVADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRR
RIDATGAVDPEITRQGEDRIIVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH
VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAPVIRTAITGGNGQITGGFDAQ
SATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMISLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLS
LFQATLTLPGMAGMLLTLGMAVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ
NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRINFMRGRFVGLATSAVLSIASV
ILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQHVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDS
VRHAVATLPGAQVLRADAVGASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF
DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTVFLAALPLALFGASLSSFAWV
MLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR
>Mature_836_residues
MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNSIRADRLQTLADGTRQALLGA
GLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAVADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRR
RIDATGAVDPEITRQGEDRIIVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH
VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAPVIRTAITGGNGQITGGFDAQ
SATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMISLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLS
LFQATLTLPGMAGMLLTLGMAVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ
NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRINFMRGRFVGLATSAVLSIASV
ILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQHVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDS
VRHAVATLPGAQVLRADAVGASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF
DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTVFLAALPLALFGASLSSFAWV
MLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=527, Percent_Identity=33.965844402277, Blast_Score=277, Evalue=2e-75,
Organism=Escherichia coli, GI1786610, Length=291, Percent_Identity=40.2061855670103, Blast_Score=196, Evalue=7e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 89815; Mature: 89815

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNS
CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEEEECCCCEEEEEECHHH
IRADRLQTLADGTRQALLGAGLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAV
HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
ADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRRRIDATGAVDPEITRQGEDRI
HHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEE
IVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH
EEECCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAP
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEHHHHCCCCEEEEEECCCCHHCC
VIRTAITGGNGQITGGFDAQSATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMI
HHHEEEECCCCEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
SLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLSLFQATLTLPGMAGMLLTLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ
HHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCCCCCEEE
FMRGRFVGLATSAVLSIASVILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQ
EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHH
HVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDSVRHAVATLPGAQVLRADAVG
HHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
ASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTV
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCCCCHH
FLAALPLALFGASLSSFAWVMLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure
MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNS
CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEEEECCCCEEEEEECHHH
IRADRLQTLADGTRQALLGAGLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAV
HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
ADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRRRIDATGAVDPEITRQGEDRI
HHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEE
IVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH
EEECCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAP
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEHHHHCCCCEEEEEECCCCHHCC
VIRTAITGGNGQITGGFDAQSATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMI
HHHEEEECCCCEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
SLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLSLFQATLTLPGMAGMLLTLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ
HHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCCCCCEEE
FMRGRFVGLATSAVLSIASVILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQ
EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHH
HVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDSVRHAVATLPGAQVLRADAVG
HHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
ASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTV
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCCCCHH
FLAALPLALFGASLSSFAWVMLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]