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The map label for this gene is exbD1 [H]

Identifier: 162147180

GI number: 162147180

Start: 1391282

End: 1391707

Strand: Direct

Name: exbD1 [H]

Synonym: GDI_1385

Alternate gene names: 162147180

Gene position: 1391282-1391707 (Clockwise)

Preceding gene: 162147179

Following gene: 162147181

Centisome position: 35.27

GC content: 62.68

Gene sequence:

>426_bases
ATGGCGATGCAAGTCGGAGGCGGCGGCGATGAAGACGAGGTGGTGTCCGCCATCAACACCACTCCGCTTGTCGACGTCAT
GCTGGTGCTGCTGATCATCTTCCTGATCACCATCCCGGTCGCAACGCATACCATCAAGGTGACCCTGCCCAAGGACGCCA
ACCAGCCCACCCAGACCAGGCCCGGAAACGTGGTCCTGGCGGTGACGGAAAACGGCCAGATCTACTGGAACGAAGTCGCG
GTCAAAAGCCGCGCCGACCTTCTGGACAGGCTGGAAAAGGTGGCCGTCATCAAGCCGCAGCCGCAGATCCAGATCCGCGG
CGACGCCAAGGCGCGGTACGAATCCGTGGGACGGGCGATCGCGACCTGCCAGGAGGCCGGGATCTACCACGTGGATTTCA
TTACCGAGCAGCCGCACTCGGACTGA

Upstream 100 bases:

>100_bases
TCCTGCTGGGTGGCTTCCGTCACGGCGTGACGCCGGACATCGTGGTGCGCCCCGATGACTCGCCGACCACCACGACGACC
TCCAACCGGGTTGCCTGAAC

Downstream 100 bases:

>100_bases
CGGACGGCGTGACCCGGTTCCGGCCTGCCGGAACCGGGGACACCGGGGGATTCACATCCGGGCACTGGCCCGCGTATTTA
GAGAGTACACCGCCATGGGC

Product: biopolymer transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAMQVGGGGDEDEVVSAINTTPLVDVMLVLLIIFLITIPVATHTIKVTLPKDANQPTQTRPGNVVLAVTENGQIYWNEVA
VKSRADLLDRLEKVAVIKPQPQIQIRGDAKARYESVGRAIATCQEAGIYHVDFITEQPHSD

Sequences:

>Translated_141_residues
MAMQVGGGGDEDEVVSAINTTPLVDVMLVLLIIFLITIPVATHTIKVTLPKDANQPTQTRPGNVVLAVTENGQIYWNEVA
VKSRADLLDRLEKVAVIKPQPQIQIRGDAKARYESVGRAIATCQEAGIYHVDFITEQPHSD
>Mature_140_residues
AMQVGGGGDEDEVVSAINTTPLVDVMLVLLIIFLITIPVATHTIKVTLPKDANQPTQTRPGNVVLAVTENGQIYWNEVAV
KSRADLLDRLEKVAVIKPQPQIQIRGDAKARYESVGRAIATCQEAGIYHVDFITEQPHSD

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=31.8840579710145, Blast_Score=69, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15358; Mature: 15227

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMQVGGGGDEDEVVSAINTTPLVDVMLVLLIIFLITIPVATHTIKVTLPKDANQPTQTR
CEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
PGNVVLAVTENGQIYWNEVAVKSRADLLDRLEKVAVIKPQPQIQIRGDAKARYESVGRAI
CCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHEEECCCCCEEEECCCHHHHHHHHHHH
ATCQEAGIYHVDFITEQPHSD
HHHHHCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AMQVGGGGDEDEVVSAINTTPLVDVMLVLLIIFLITIPVATHTIKVTLPKDANQPTQTR
EEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
PGNVVLAVTENGQIYWNEVAVKSRADLLDRLEKVAVIKPQPQIQIRGDAKARYESVGRAI
CCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHEEECCCCCEEEECCCHHHHHHHHHHH
ATCQEAGIYHVDFITEQPHSD
HHHHHCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]