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The map label for this gene is lsdD [H]

Identifier: 162146314

GI number: 162146314

Start: 485562

End: 487880

Strand: Direct

Name: lsdD [H]

Synonym: GDI_0489

Alternate gene names: 162146314

Gene position: 485562-487880 (Clockwise)

Preceding gene: 162146313

Following gene: 162146315

Centisome position: 12.31

GC content: 68.22

Gene sequence:

>2319_bases
ATGAACAGTGACACGACTTCCCGTCGCGGCATGACCTCCCGCCGTGCGCAGACCGCCTGGACCGGCATCGCCTTGTGTTT
TTCGATCGCGGGATGCAGCCCCGACAAGCCGCCGCATGTCTCGCCGCTGGGCGGTCCCCTGCCGCTGGGCGGCACGGCGC
CCGACCTGATGGGTGGCCGGATCGAGGGCACGGACCAGGTCGGGCCGGCGCAATACAGCTACGGCCGCGGCGCGCTGCCG
CTGATCCGGGGCCAGGGCCGCCCGTACCAGGGCGGGGGCGACATCGCGCTGAATTTCGCCGATACCGATGTCCGTGACGC
CGTCTCGCAGATCATGACGGACATCCTGCACGTGAATTACGCGATCGACCCGGCGGTGCACGGGCGCGTGACGCTGCATA
CGTCCCAGCCCCTGACCGCCGGGCAGCTTCTGCCCGCCCTGCAGATCATCCTGGCCCAGGTGCACGCCGTCCTGATCCAG
GCCGACGGGCTGTACCGCATCGTGCCGGCCCAGGCCGATTCGGCAAATCCCCAGTCCAGCGCGGCAGGGATCGCGGAAAA
CGCGTCGCTGGGCGGCAGCGTCATGGTGCCGCTGCGCTACGCCGATGCCGCAAACCTGGCCAAGGCACTGCAACCGTTCC
TGCAGGGCGGCGCCCGCGTCACTCCGGTGGACAGCGCGAACGCCGTGATCGTCAGCGGCGAGCCGTCCGCGCGCAATACG
CTGGTCGATGTCATCCATGCCTTCGACGTGGACTGGCTCAGCAGCCAGTCCTATGCCCTCCTGCCGGTGGAATCGGGAAA
TGCCAGGGATATGGCAACGGCGTTGCAAAGTGCCCTGCATGGCGGCAACCTGGTGCAGGTCCTGCCGCTGGCGCGGGTCA
ATGCCGTGCTGGTCGTCGCGCGCAGCGCGCGGCAGATCGACGATGCACGGCGCCTCTTTGCGCTGATCGAACGCAATCGG
CGCGCGACCATGCGGTCGTGGCATGTGTTCTACGTGCAGAATTCCAGCGTGAACGACGTGACCTATACATTGCAGCAGGC
CTTCACGCCGGGCGACGTGACGGCCACGCCGCCCGAAACCACGTCCGGCACGGCCTCGCAACTGGGCCAGTCCGGCTTCA
CCGGCACCATGGCCAACGCCATGGGCGGCGGCGGGCTGGGCGGCAGCGCGGGCACGGGGAACACCACGGGCCTGATGGGC
GGCAGCCAGCAGGGCGGGGTCCAGGCCACCGCCGGCCAGGCACCGACCGGCCAGGCGGGCGGGGGGCCGGCGGCATTCGC
CAATCCCCTGCTGGGCGGCCTGGACAACACTGCCAGCGCCGAAGGCCGCCCGCAGGCGATGCGGATCATTTCCAATTCCC
AGCATAACGCGATCCTGGTCTACGGGACGGACCAGGAAAGCGACACGGTCGAACAGATGCTGCGCCGGATCGACGTCATG
CCGCTGCAGGTCCGCATCGATGCCGTCATCGCCGAGGTGCAGCTGAACGACGCGCTGCAGTACGGCACGCAGTTCTTCTT
CAAATCCGGCGGCATCAACGGCGTGCTCAGCACCAACAGCCAGACGATCACCACCGGCACCCTGGCCACCGCCGCCTTCA
GCCATACGCTGCCCGGCTTCATCATCGGGGGCGCCAGCGGCGGCGGCGCGCCCTTCGCCATCGACGCGCTGCAGAACGTC
ACCACCGTCCACGTCCTGTCCTCGCCGCAACTGATGGTCCAGGACAACCGGGCGGCCCGGCTGCAGGTCGGGCAACTGGT
GCCGGTCCAGATCGGCTCGCAATCCAGCACCATCGGCACGTCGATCTACAACCAGTTCACCTATCAGCCGACCGGCGTGA
TCATGCAGGTGACGCCCCATGTCAGCGAGGGCGGGCTGGTCACGCTGGACGTGTCGCAGGAGGTCAGTTCCGTCAGCCCG
ACCGCCGCCAGCACGGCCAACGCGGCGTCCAATCCCACCTTCAACGACCGTTCGGTCAGTTCCCGCGTCGTGGTCCAGGA
CGGGCAGACGGTGGGGCTGGCCGGCCTGATCACCGACAGTTCCAGCCGCATCAACAGCGGCATCCCGTGGCTGAAGAACA
TCCCGGTCCTGGGCGTCCTGGCAGGGAACCAGAACAACAACCGCCAGCGGACGGAATTGCTGATCCTGATGACGCCGCAC
GTCATCCATGACCAGCGCGACGCGGTCGACCTGATGGAGGATCTGCGCGACACCCATCCCAACGCGGCGAACGTCCCCGA
CGAATTGCGGGTCATGCGCATGACCGGCAGCGCCGACCCCCAGCAGCGCCTGCGCGAAAAGGTCGGGCTGGGACCGTGA

Upstream 100 bases:

>100_bases
GCGACCGCAGCGCCGATACACCGGCACCGGGCGACGCATCCTCCATCGACAACAGTTCCGGCCTTCCCCGGACAGAAGAA
CGGATTCCAGGCAACACGCA

Downstream 100 bases:

>100_bases
CCCGCGAAGGTCGTCGGGATCGGGGCTTCGCCCTGCTGATCGTGCTGTGGACGCTGGTCCTGCTGTCGTTCCTGGCCTCC
GTCATCGTCACCTCGGCCGG

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MNSDTTSRRGMTSRRAQTAWTGIALCFSIAGCSPDKPPHVSPLGGPLPLGGTAPDLMGGRIEGTDQVGPAQYSYGRGALP
LIRGQGRPYQGGGDIALNFADTDVRDAVSQIMTDILHVNYAIDPAVHGRVTLHTSQPLTAGQLLPALQIILAQVHAVLIQ
ADGLYRIVPAQADSANPQSSAAGIAENASLGGSVMVPLRYADAANLAKALQPFLQGGARVTPVDSANAVIVSGEPSARNT
LVDVIHAFDVDWLSSQSYALLPVESGNARDMATALQSALHGGNLVQVLPLARVNAVLVVARSARQIDDARRLFALIERNR
RATMRSWHVFYVQNSSVNDVTYTLQQAFTPGDVTATPPETTSGTASQLGQSGFTGTMANAMGGGGLGGSAGTGNTTGLMG
GSQQGGVQATAGQAPTGQAGGGPAAFANPLLGGLDNTASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVM
PLQVRIDAVIAEVQLNDALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGFIIGGASGGGAPFAIDALQNV
TTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGVIMQVTPHVSEGGLVTLDVSQEVSSVSP
TAASTANAASNPTFNDRSVSSRVVVQDGQTVGLAGLITDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPH
VIHDQRDAVDLMEDLRDTHPNAANVPDELRVMRMTGSADPQQRLREKVGLGP

Sequences:

>Translated_772_residues
MNSDTTSRRGMTSRRAQTAWTGIALCFSIAGCSPDKPPHVSPLGGPLPLGGTAPDLMGGRIEGTDQVGPAQYSYGRGALP
LIRGQGRPYQGGGDIALNFADTDVRDAVSQIMTDILHVNYAIDPAVHGRVTLHTSQPLTAGQLLPALQIILAQVHAVLIQ
ADGLYRIVPAQADSANPQSSAAGIAENASLGGSVMVPLRYADAANLAKALQPFLQGGARVTPVDSANAVIVSGEPSARNT
LVDVIHAFDVDWLSSQSYALLPVESGNARDMATALQSALHGGNLVQVLPLARVNAVLVVARSARQIDDARRLFALIERNR
RATMRSWHVFYVQNSSVNDVTYTLQQAFTPGDVTATPPETTSGTASQLGQSGFTGTMANAMGGGGLGGSAGTGNTTGLMG
GSQQGGVQATAGQAPTGQAGGGPAAFANPLLGGLDNTASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVM
PLQVRIDAVIAEVQLNDALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGFIIGGASGGGAPFAIDALQNV
TTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGVIMQVTPHVSEGGLVTLDVSQEVSSVSP
TAASTANAASNPTFNDRSVSSRVVVQDGQTVGLAGLITDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPH
VIHDQRDAVDLMEDLRDTHPNAANVPDELRVMRMTGSADPQQRLREKVGLGP
>Mature_772_residues
MNSDTTSRRGMTSRRAQTAWTGIALCFSIAGCSPDKPPHVSPLGGPLPLGGTAPDLMGGRIEGTDQVGPAQYSYGRGALP
LIRGQGRPYQGGGDIALNFADTDVRDAVSQIMTDILHVNYAIDPAVHGRVTLHTSQPLTAGQLLPALQIILAQVHAVLIQ
ADGLYRIVPAQADSANPQSSAAGIAENASLGGSVMVPLRYADAANLAKALQPFLQGGARVTPVDSANAVIVSGEPSARNT
LVDVIHAFDVDWLSSQSYALLPVESGNARDMATALQSALHGGNLVQVLPLARVNAVLVVARSARQIDDARRLFALIERNR
RATMRSWHVFYVQNSSVNDVTYTLQQAFTPGDVTATPPETTSGTASQLGQSGFTGTMANAMGGGGLGGSAGTGNTTGLMG
GSQQGGVQATAGQAPTGQAGGGPAAFANPLLGGLDNTASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVM
PLQVRIDAVIAEVQLNDALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGFIIGGASGGGAPFAIDALQNV
TTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGVIMQVTPHVSEGGLVTLDVSQEVSSVSP
TAASTANAASNPTFNDRSVSSRVVVQDGQTVGLAGLITDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPH
VIHDQRDAVDLMEDLRDTHPNAANVPDELRVMRMTGSADPQQRLREKVGLGP

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=308, Percent_Identity=29.5454545454545, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1789793, Length=275, Percent_Identity=22.1818181818182, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 80476; Mature: 80476

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDTTSRRGMTSRRAQTAWTGIALCFSIAGCSPDKPPHVSPLGGPLPLGGTAPDLMGGR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCE
IEGTDQVGPAQYSYGRGALPLIRGQGRPYQGGGDIALNFADTDVRDAVSQIMTDILHVNY
ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCE
AIDPAVHGRVTLHTSQPLTAGQLLPALQIILAQVHAVLIQADGLYRIVPAQADSANPQSS
EECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCHH
AAGIAENASLGGSVMVPLRYADAANLAKALQPFLQGGARVTPVDSANAVIVSGEPSARNT
HCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCHHHH
LVDVIHAFDVDWLSSQSYALLPVESGNARDMATALQSALHGGNLVQVLPLARVNAVLVVA
HHHHHHHHCCHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECHHHHCEEEEEE
RSARQIDDARRLFALIERNRRATMRSWHVFYVQNSSVNDVTYTLQQAFTPGDVTATPPET
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCC
TSGTASQLGQSGFTGTMANAMGGGGLGGSAGTGNTTGLMGGSQQGGVQATAGQAPTGQAG
CCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
GGPAAFANPLLGGLDNTASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVM
CCCHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCCCEEEEEECCCCHHHHHHHHHHHCCC
PLQVRIDAVIAEVQLNDALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGF
EEEEEEEEEEEEHHHHHHHHHHHHHEEECCCCCEEEECCCCEEEECHHHHHHHHHCCCCE
IIGGASGGGAPFAIDALQNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGT
EEECCCCCCCCEEHHHHCCCEEEEEECCCEEEEECCCCEEEEECCEEEEEECCCCCHHHH
SIYNQFTYQPTGVIMQVTPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVS
HHHHCEEECCCCEEEEECCCCCCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
SRVVVQDGQTVGLAGLITDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPH
CEEEEECCCEEEEEEEEECCCCHHCCCCCHHHCCCEEEEEECCCCCCCEEEEEEEEECCH
VIHDQRDAVDLMEDLRDTHPNAANVPDELRVMRMTGSADPQQRLREKVGLGP
HHCCCHHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNSDTTSRRGMTSRRAQTAWTGIALCFSIAGCSPDKPPHVSPLGGPLPLGGTAPDLMGGR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCE
IEGTDQVGPAQYSYGRGALPLIRGQGRPYQGGGDIALNFADTDVRDAVSQIMTDILHVNY
ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCE
AIDPAVHGRVTLHTSQPLTAGQLLPALQIILAQVHAVLIQADGLYRIVPAQADSANPQSS
EECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCHH
AAGIAENASLGGSVMVPLRYADAANLAKALQPFLQGGARVTPVDSANAVIVSGEPSARNT
HCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCHHHH
LVDVIHAFDVDWLSSQSYALLPVESGNARDMATALQSALHGGNLVQVLPLARVNAVLVVA
HHHHHHHHCCHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECHHHHCEEEEEE
RSARQIDDARRLFALIERNRRATMRSWHVFYVQNSSVNDVTYTLQQAFTPGDVTATPPET
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCC
TSGTASQLGQSGFTGTMANAMGGGGLGGSAGTGNTTGLMGGSQQGGVQATAGQAPTGQAG
CCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
GGPAAFANPLLGGLDNTASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVM
CCCHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCCCEEEEEECCCCHHHHHHHHHHHCCC
PLQVRIDAVIAEVQLNDALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGF
EEEEEEEEEEEEHHHHHHHHHHHHHEEECCCCCEEEECCCCEEEECHHHHHHHHHCCCCE
IIGGASGGGAPFAIDALQNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGT
EEECCCCCCCCEEHHHHCCCEEEEEECCCEEEEECCCCEEEEECCEEEEEECCCCCHHHH
SIYNQFTYQPTGVIMQVTPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVS
HHHHCEEECCCCEEEEECCCCCCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
SRVVVQDGQTVGLAGLITDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPH
CEEEEECCCEEEEEEEEECCCCHHCCCCCHHHCCCEEEEEECCCCCCCEEEEEEEEECCH
VIHDQRDAVDLMEDLRDTHPNAANVPDELRVMRMTGSADPQQRLREKVGLGP
HHCCCHHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]