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The map label for this gene is lsdK [H]

Identifier: 162146315

GI number: 162146315

Start: 487877

End: 488686

Strand: Direct

Name: lsdK [H]

Synonym: GDI_0490

Alternate gene names: 162146315

Gene position: 487877-488686 (Clockwise)

Preceding gene: 162146314

Following gene: 162146319

Centisome position: 12.37

GC content: 71.98

Gene sequence:

>810_bases
GTGACCCGCGAAGGTCGTCGGGATCGGGGCTTCGCCCTGCTGATCGTGCTGTGGACGCTGGTCCTGCTGTCGTTCCTGGC
CTCCGTCATCGTCACCTCGGCCGGCCAGCAGCTTCGTACCGTCGCCGCCCTGCGGCGCGCGACCCAGATACAGGCGATGG
CGGATGGCGCGGTGTGGGAAGGCGCGTTCCACGCCCTGGACCGGTCCGCCGGGCACTGGGCCGCCGACGGGCGCGACCAT
GTGCGGCGCGGGGGGGGCATGGCGGTGCGCATCCGCCTGACCAGCGAAGCCGGGCTGGTCAATCCCAATTCCCCGTCCCG
TCCGCTGCTGGCCGCGCTGTTGCAGGCCTGCGGCGCGCAGAAACAGCAGGCCGGGACGATCGCCGCCAACATCGCGGACT
GGCGCGGCAGCGCCGCCCAGGGCGTGACCCCCCGCACCCGGGCGCTCTATCTCGCGGCCGGGCTGCCTTACACACCCCCG
GGCGATCCGTTCCGCAGCGTCGCGGAAGTGGGGCTGGTGCTGGGCATGACGCCGGCATTGTGGCTGGCGGTCCAGCCGCA
TCTGTCGGTGACGCAGCCCAACGACCCGGACATCGCGATGGCCGATCCCGTGGTGCGCCAGGCCCTCCGCCAGGCCGGGT
CGGTCGTCCCGAACGCCCTCGAGGGAAGCCGGTCCGTGACCGTCATCGTCGACGTGGCGGTCGACGATGGCGAAGGGACC
CACGCCTCACGCCACGCCGTTATCCTGCTGGCGCCGGACGTGCAGGGCGGCGTGGACGACATGACGCGGATTCTCATGAT
TCACGCGTGA

Upstream 100 bases:

>100_bases
ATCCCAACGCGGCGAACGTCCCCGACGAATTGCGGGTCATGCGCATGACCGGCAGCGCCGACCCCCAGCAGCGCCTGCGC
GAAAAGGTCGGGCTGGGACC

Downstream 100 bases:

>100_bases
AGACTGGCCGGCCGCGCCACGGGACCGTGGCCGGACCCGGCCCTTGCCTTCAGTGCTTGATGGTGGACGCGCGATAGATC
TTGTCGATCGCCGTCGCCAG

Product: general secretion pathway protein K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTREGRRDRGFALLIVLWTLVLLSFLASVIVTSAGQQLRTVAALRRATQIQAMADGAVWEGAFHALDRSAGHWAADGRDH
VRRGGGMAVRIRLTSEAGLVNPNSPSRPLLAALLQACGAQKQQAGTIAANIADWRGSAAQGVTPRTRALYLAAGLPYTPP
GDPFRSVAEVGLVLGMTPALWLAVQPHLSVTQPNDPDIAMADPVVRQALRQAGSVVPNALEGSRSVTVIVDVAVDDGEGT
HASRHAVILLAPDVQGGVDDMTRILMIHA

Sequences:

>Translated_269_residues
MTREGRRDRGFALLIVLWTLVLLSFLASVIVTSAGQQLRTVAALRRATQIQAMADGAVWEGAFHALDRSAGHWAADGRDH
VRRGGGMAVRIRLTSEAGLVNPNSPSRPLLAALLQACGAQKQQAGTIAANIADWRGSAAQGVTPRTRALYLAAGLPYTPP
GDPFRSVAEVGLVLGMTPALWLAVQPHLSVTQPNDPDIAMADPVVRQALRQAGSVVPNALEGSRSVTVIVDVAVDDGEGT
HASRHAVILLAPDVQGGVDDMTRILMIHA
>Mature_268_residues
TREGRRDRGFALLIVLWTLVLLSFLASVIVTSAGQQLRTVAALRRATQIQAMADGAVWEGAFHALDRSAGHWAADGRDHV
RRGGGMAVRIRLTSEAGLVNPNSPSRPLLAALLQACGAQKQQAGTIAANIADWRGSAAQGVTPRTRALYLAAGLPYTPPG
DPFRSVAEVGLVLGMTPALWLAVQPHLSVTQPNDPDIAMADPVVRQALRQAGSVVPNALEGSRSVTVIVDVAVDDGEGTH
ASRHAVILLAPDVQGGVDDMTRILMIHA

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3156

COG function: function code U; Type II secretory pathway, component PulK

Gene ontology:

Cell location: Cell inner membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP K family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005628 [H]

Pfam domain/function: PF03934 GspK [H]

EC number: NA

Molecular weight: Translated: 28354; Mature: 28223

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTREGRRDRGFALLIVLWTLVLLSFLASVIVTSAGQQLRTVAALRRATQIQAMADGAVWE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHH
GAFHALDRSAGHWAADGRDHVRRGGGMAVRIRLTSEAGLVNPNSPSRPLLAALLQACGAQ
HHHHHHHCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
KQQAGTIAANIADWRGSAAQGVTPRTRALYLAAGLPYTPPGDPFRSVAEVGLVLGMTPAL
HHHCCCEEEEHHHCCCCCCCCCCCCHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHH
WLAVQPHLSVTQPNDPDIAMADPVVRQALRQAGSVVPNALEGSRSVTVIVDVAVDDGEGT
EEEECCCCEECCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCC
HASRHAVILLAPDVQGGVDDMTRILMIHA
CCCCCEEEEECCCCCCCHHHHHHHHEECC
>Mature Secondary Structure 
TREGRRDRGFALLIVLWTLVLLSFLASVIVTSAGQQLRTVAALRRATQIQAMADGAVWE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHH
GAFHALDRSAGHWAADGRDHVRRGGGMAVRIRLTSEAGLVNPNSPSRPLLAALLQACGAQ
HHHHHHHCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
KQQAGTIAANIADWRGSAAQGVTPRTRALYLAAGLPYTPPGDPFRSVAEVGLVLGMTPAL
HHHCCCEEEEHHHCCCCCCCCCCCCHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHH
WLAVQPHLSVTQPNDPDIAMADPVVRQALRQAGSVVPNALEGSRSVTVIVDVAVDDGEGT
EEEECCCCEECCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCC
HASRHAVILLAPDVQGGVDDMTRILMIHA
CCCCCEEEEECCCCCCCHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]