Click here to switch to the map view.

The map label for this gene is allC [H]

Identifier: 162146041

GI number: 162146041

Start: 225720

End: 226985

Strand: Direct

Name: allC [H]

Synonym: GDI_0209

Alternate gene names: 162146041

Gene position: 225720-226985 (Clockwise)

Preceding gene: 162146040

Following gene: 162146042

Centisome position: 5.72

GC content: 68.8

Gene sequence:

>1266_bases
ATGACCGTCATGCCACCCGCGCTGGACGACGCACGCGCGTTATTCGCCCGTCTGCACACGATCGGCTTCGACGGGCTGGG
AATGACCCGTGCGTCGTACGGCGACGGCGAAAACCAGGCGCATGCGCTGCTGGCGGACATGGCGCGGGCACGCGGCCTGC
TGGTGCGCCGCGATTGGGCCGGCAACCTGTTCATCACCCTGCCGGGCCGCGACCGGACATTGCCGGCGGTGATGACCGGA
TCGCATCTCGACACCGTGCCTTGCGGCGGCAATTACGATGGCGCGGCCGGCGTGCTGGCGGGCTTTTCCTGCCTGTGCGG
CTGGGTGGACGCAGGATACGTGCCGGCGCGCGACGTGGTCCTGATCGTCACCCGGGCCGAGGAAAGCGTGTGGTTCCCGG
TCTCGTATATCGGCAGCAAGAGCGCCTTCGGACTGCTCGAGGACAGCGCGCTGGCGGCGGTTCGCCGTGACGATGGACAG
ACCCTGGCCGATCACATGCGCGCCTCGGGCGGGCAGCCCGATTGCATCCGTACCGCGCCGGTGCTGCGGCCGTCCGACCT
GGCGTGTTTCGTCGAACTGCATATCGAACAGGGGCCGGTCCTGCCGGCGGCCGGCGTGCCGGTCGGCATCGTGACGGGCA
TCTGTGGCAGCGTGCGCTATCGCGCGGCGACCATCCACGGGCGCTATGCCCATTCCGGCGCAACGCCGCGTGCGTTCCGC
GCCGACGCGGTCATGGCGGCGGCGACGCTGATGACGGTGATGCAGGCCGAGTGGCGCAAGGTCGAAGCCGAAGGCGGCGA
GATGACGCTGACCTTCGGCGTCTGTCATACGGATGCCGCCCAGGCGAATTTCAGCGCCGTTGCCGGACGGGTCGATCTCA
GTATCGATATCCGCTCGCGCGATCATGGCCTGCTCGAGCGTATGGAGGCGGCCCTGCTGGCGCACACCCGGGCTGTCGAG
GACGAGTATGGTGTCCAGATCGATCTCGGCGCCCGCACGCAGAGCGCGCCGGCCGCAATGGACGCGACGCTGCAGGCCGA
AGCCGTCGCCCTGGCGCGAAAGGCCGGTATCCCGGCGGTGACGCTGCCCAGTGGTGCCGGGCATGATGCCGCGATCTTCG
CCGGGCAGGGCGTACCCACGGTGATGCTGTTCGTCCGGAACGCCAACGGCAGCCACAACCCCTACGAGGCCATGGAATTC
GAGGATTTCGCCCTGGCGACGCGGCTGCTCGAACGGCTGCTGTACCGGCATGCGGAGCAAGGATGA

Upstream 100 bases:

>100_bases
GCTGGACCTCTCCCGCCCTGGACGCCCTGATCGCCCATCTGGTGCAGGCCTGCCCGGGGGACGAGCTTCCGTCCGACGCA
CGGGCCGGGGAGCAGGCTCC

Downstream 100 bases:

>100_bases
TGATGAAGATCGGCCTGACCGGTGATTCGATTCTCTTTCGGCGCCTGAACAGCACGCAGGATGCCGAAATCCGGCCGCTG
TTCGACCTGATCCGGAGCTG

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: Allantoate deiminase [H]

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MTVMPPALDDARALFARLHTIGFDGLGMTRASYGDGENQAHALLADMARARGLLVRRDWAGNLFITLPGRDRTLPAVMTG
SHLDTVPCGGNYDGAAGVLAGFSCLCGWVDAGYVPARDVVLIVTRAEESVWFPVSYIGSKSAFGLLEDSALAAVRRDDGQ
TLADHMRASGGQPDCIRTAPVLRPSDLACFVELHIEQGPVLPAAGVPVGIVTGICGSVRYRAATIHGRYAHSGATPRAFR
ADAVMAAATLMTVMQAEWRKVEAEGGEMTLTFGVCHTDAAQANFSAVAGRVDLSIDIRSRDHGLLERMEAALLAHTRAVE
DEYGVQIDLGARTQSAPAAMDATLQAEAVALARKAGIPAVTLPSGAGHDAAIFAGQGVPTVMLFVRNANGSHNPYEAMEF
EDFALATRLLERLLYRHAEQG

Sequences:

>Translated_421_residues
MTVMPPALDDARALFARLHTIGFDGLGMTRASYGDGENQAHALLADMARARGLLVRRDWAGNLFITLPGRDRTLPAVMTG
SHLDTVPCGGNYDGAAGVLAGFSCLCGWVDAGYVPARDVVLIVTRAEESVWFPVSYIGSKSAFGLLEDSALAAVRRDDGQ
TLADHMRASGGQPDCIRTAPVLRPSDLACFVELHIEQGPVLPAAGVPVGIVTGICGSVRYRAATIHGRYAHSGATPRAFR
ADAVMAAATLMTVMQAEWRKVEAEGGEMTLTFGVCHTDAAQANFSAVAGRVDLSIDIRSRDHGLLERMEAALLAHTRAVE
DEYGVQIDLGARTQSAPAAMDATLQAEAVALARKAGIPAVTLPSGAGHDAAIFAGQGVPTVMLFVRNANGSHNPYEAMEF
EDFALATRLLERLLYRHAEQG
>Mature_420_residues
TVMPPALDDARALFARLHTIGFDGLGMTRASYGDGENQAHALLADMARARGLLVRRDWAGNLFITLPGRDRTLPAVMTGS
HLDTVPCGGNYDGAAGVLAGFSCLCGWVDAGYVPARDVVLIVTRAEESVWFPVSYIGSKSAFGLLEDSALAAVRRDDGQT
LADHMRASGGQPDCIRTAPVLRPSDLACFVELHIEQGPVLPAAGVPVGIVTGICGSVRYRAATIHGRYAHSGATPRAFRA
DAVMAAATLMTVMQAEWRKVEAEGGEMTLTFGVCHTDAAQANFSAVAGRVDLSIDIRSRDHGLLERMEAALLAHTRAVED
EYGVQIDLGARTQSAPAAMDATLQAEAVALARKAGIPAVTLPSGAGHDAAIFAGQGVPTVMLFVRNANGSHNPYEAMEFE
DFALATRLLERLLYRHAEQG

Specific function: Involved in the anaerobic utilization of allantoin. Converts allantoate to (S)-ureidoglycolate and ammonia [H]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=396, Percent_Identity=34.3434343434343, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017591
- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: 3.5.3.- [C]

Molecular weight: Translated: 44592; Mature: 44461

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVMPPALDDARALFARLHTIGFDGLGMTRASYGDGENQAHALLADMARARGLLVRRDWA
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECC
GNLFITLPGRDRTLPAVMTGSHLDTVPCGGNYDGAAGVLAGFSCLCGWVDAGYVPARDVV
CCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
LIVTRAEESVWFPVSYIGSKSAFGLLEDSALAAVRRDDGQTLADHMRASGGQPDCIRTAP
EEEEECCCCEEEEHHHCCCCCCCCCCCCHHHHEEECCCCHHHHHHHHHCCCCCCCEECCC
VLRPSDLACFVELHIEQGPVLPAAGVPVGIVTGICGSVRYRAATIHGRYAHSGATPRAFR
CCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECEEECCCCCCCHHH
ADAVMAAATLMTVMQAEWRKVEAEGGEMTLTFGVCHTDAAQANFSAVAGRVDLSIDIRSR
HHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEEECCCCCCCHHHEEEEEEEEEEECCC
DHGLLERMEAALLAHTRAVEDEYGVQIDLGARTQSAPAAMDATLQAEAVALARKAGIPAV
CHHHHHHHHHHHHHHHHHCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
TLPSGAGHDAAIFAGQGVPTVMLFVRNANGSHNPYEAMEFEDFALATRLLERLLYRHAEQ
ECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
G
C
>Mature Secondary Structure 
TVMPPALDDARALFARLHTIGFDGLGMTRASYGDGENQAHALLADMARARGLLVRRDWA
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECC
GNLFITLPGRDRTLPAVMTGSHLDTVPCGGNYDGAAGVLAGFSCLCGWVDAGYVPARDVV
CCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
LIVTRAEESVWFPVSYIGSKSAFGLLEDSALAAVRRDDGQTLADHMRASGGQPDCIRTAP
EEEEECCCCEEEEHHHCCCCCCCCCCCCHHHHEEECCCCHHHHHHHHHCCCCCCCEECCC
VLRPSDLACFVELHIEQGPVLPAAGVPVGIVTGICGSVRYRAATIHGRYAHSGATPRAFR
CCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECEEECCCCCCCHHH
ADAVMAAATLMTVMQAEWRKVEAEGGEMTLTFGVCHTDAAQANFSAVAGRVDLSIDIRSR
HHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEEECCCCCCCHHHEEEEEEEEEEECCC
DHGLLERMEAALLAHTRAVEDEYGVQIDLGARTQSAPAAMDATLQAEAVALARKAGIPAV
CHHHHHHHHHHHHHHHHHCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
TLPSGAGHDAAIFAGQGVPTVMLFVRNANGSHNPYEAMEFEDFALATRLLERLLYRHAEQ
ECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10601204; 9278503 [H]