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The map label for this gene is 161870433

Identifier: 161870433

GI number: 161870433

Start: 1510732

End: 1511385

Strand: Direct

Name: 161870433

Synonym: NMCC_1482

Alternate gene names: NA

Gene position: 1510732-1511385 (Clockwise)

Preceding gene: 161870428

Following gene: 161870434

Centisome position: 70.16

GC content: 54.59

Gene sequence:

>654_bases
ATGTTTTCCGTACCGCGTTCCTTTTTGCCGGGCGTTTTCGTACTTGCCGCGCTTGCCGCCTGCAAACCTCAAGACAACAG
TGCGGCGCAAGCCGCTTCTTCAAGTGCATCCGCGTCAGCTGCGGAAAATGCGGCAAAGCCGCAAACGCGCGGTACGGATA
TGCGTAAGGAAGACATCGGCGGCGATTTCACGCTGACCGACGGCGAAGGCAAGCCTTTCAGCCTGAGCGATTTGAAAGGC
AAGGTCGTGATTCTGTCTTTCGGCTTTACGCACTGTCCCGATGTCTGCCCGACAGAGCTTTTGACGTACAGCGACACGTT
GAAGCAGTTGGGCGGGCAGGCTAAGGACGTGAAAGTGGTGTTCGTCAGCATCGATCCGGAACGCGACACGCCTGAAATCA
TCGGCAAGTATGCCAAACAGTTCAATCCGGACTTTATCGGTCTGACGGCAACGGGCGACCAAAACCTGCCGGTCATCAAG
CAGCAATACCGCGTGGTTTCTGCCAAAGTCAATCAAAAAGACGACAGCGAAAACTATTTGGTCGACCACTCTTCCGGTGC
GTATCTCATCGACAAAAACGGTGAGGTTGCCATTTTCTCGCCTTACGGAAGCGAGCCGGAAACGATTGCTGCCGATGTAA
GGACTCTGCTCTGA

Upstream 100 bases:

>100_bases
ACGTAAAAAAATACTACATTAAATCTGCCAAACGCGTTAAGATGGAAATATTCAAATTCCGTACGAATCAGGTTTTGCTA
TTTATTCTTGGGAGATTGTC

Downstream 100 bases:

>100_bases
TAAAACCGTATGCCGTCTGCACCGTCGGCGCCTATTCAGACGGCATTATTGTTTCAACCGACAAAGGACATCCACACCAT
GCAGGATAATGCTTTGACCA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MFSVPRSFLPGVFVLAALAACKPQDNSAAQAASSSASASAAENAAKPQTRGTDMRKEDIGGDFTLTDGEGKPFSLSDLKG
KVVILSFGFTHCPDVCPTELLTYSDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIK
QQYRVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL

Sequences:

>Translated_217_residues
MFSVPRSFLPGVFVLAALAACKPQDNSAAQAASSSASASAAENAAKPQTRGTDMRKEDIGGDFTLTDGEGKPFSLSDLKG
KVVILSFGFTHCPDVCPTELLTYSDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIK
QQYRVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL
>Mature_217_residues
MFSVPRSFLPGVFVLAALAACKPQDNSAAQAASSSASASAAENAAKPQTRGTDMRKEDIGGDFTLTDGEGKPFSLSDLKG
KVVILSFGFTHCPDVCPTELLTYSDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIK
QQYRVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=178, Percent_Identity=34.2696629213483, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI281182722, Length=178, Percent_Identity=34.2696629213483, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI281182716, Length=178, Percent_Identity=34.2696629213483, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI153791313, Length=178, Percent_Identity=34.2696629213483, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI4759068, Length=170, Percent_Identity=36.4705882352941, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17531419, Length=170, Percent_Identity=32.3529411764706, Blast_Score=92, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6319498, Length=139, Percent_Identity=43.8848920863309, Blast_Score=119, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6319511, Length=141, Percent_Identity=36.8794326241135, Blast_Score=96, Evalue=6e-21,
Organism=Drosophila melanogaster, GI19920710, Length=156, Percent_Identity=35.8974358974359, Blast_Score=112, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23213; Mature: 23213

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSVPRSFLPGVFVLAALAACKPQDNSAAQAASSSASASAAENAAKPQTRGTDMRKEDIG
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCCCCHHHHCC
GDFTLTDGEGKPFSLSDLKGKVVILSFGFTHCPDVCPTELLTYSDTLKQLGGQAKDVKVV
CCEEEECCCCCCEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
FVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIKQQYRVVSAKVNQKDDSENYL
EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEE
VDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL
EECCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MFSVPRSFLPGVFVLAALAACKPQDNSAAQAASSSASASAAENAAKPQTRGTDMRKEDIG
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCCCCHHHHCC
GDFTLTDGEGKPFSLSDLKGKVVILSFGFTHCPDVCPTELLTYSDTLKQLGGQAKDVKVV
CCEEEECCCCCCEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
FVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIKQQYRVVSAKVNQKDDSENYL
EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEE
VDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL
EECCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]