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The map label for this gene is sdhD [H]

Identifier: 161869862

GI number: 161869862

Start: 893233

End: 893574

Strand: Direct

Name: sdhD [H]

Synonym: NMCC_0893

Alternate gene names: 161869862

Gene position: 893233-893574 (Clockwise)

Preceding gene: 161869861

Following gene: 161869863

Centisome position: 41.48

GC content: 45.91

Gene sequence:

>342_bases
ATGGTAGAACGTAAATTGACCGGTGCCCATTACGGTTTGCGCGATTGGGTGATGCAACGTGCGACTGCGGTTATTATGTT
GATTTATACCGTTGCACTTTTAGTGGTTCTATTTTCCCTGCCTAAAGAATATTCGGCATGGCAGGCATTTTTTAGTCAAA
CTTGGGTAAAAGTATTTACCCAAGTGAGCTTCATCGCCGTATTCTTGCACGCTTGGGTGGGTATCCGCGATTTGTGGATG
GACTATATCAAACCCTTCGGCGTGCGTTTGTTTTTGCAGGTTGCCACCATCGTTTGGCTGGTCGGCTGTCTCGTGTATTC
AGTTAAAGTGATTTGGGGGTAA

Upstream 100 bases:

>100_bases
TGGATGCGCACAAAGGCCTTGAGCTGAATACTGCGCGCAATACCGCTAAAGCCGTATTTGCTTCTGCATTGGTTTTGACT
GTCGTTTTGGGAGCGTTGTT

Downstream 100 bases:

>100_bases
GTATGGGTTTTCCTGTTCGCAAGTTTGATGCCGTGATTGTCGGCGGTGGTGGTGCAGGTTTACGCGCAGCCCTCCAATTA
TCCAAATCCGGTCTGAATTG

Product: succinate dehydrogenase hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MVERKLTGAHYGLRDWVMQRATAVIMLIYTVALLVVLFSLPKEYSAWQAFFSQTWVKVFTQVSFIAVFLHAWVGIRDLWM
DYIKPFGVRLFLQVATIVWLVGCLVYSVKVIWG

Sequences:

>Translated_113_residues
MVERKLTGAHYGLRDWVMQRATAVIMLIYTVALLVVLFSLPKEYSAWQAFFSQTWVKVFTQVSFIAVFLHAWVGIRDLWM
DYIKPFGVRLFLQVATIVWLVGCLVYSVKVIWG
>Mature_113_residues
MVERKLTGAHYGLRDWVMQRATAVIMLIYTVALLVVLFSLPKEYSAWQAFFSQTWVKVFTQVSFIAVFLHAWVGIRDLWM
DYIKPFGVRLFLQVATIVWLVGCLVYSVKVIWG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=115, Percent_Identity=33.9130434782609, Blast_Score=66, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13149; Mature: 13149

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVERKLTGAHYGLRDWVMQRATAVIMLIYTVALLVVLFSLPKEYSAWQAFFSQTWVKVFT
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QVSFIAVFLHAWVGIRDLWMDYIKPFGVRLFLQVATIVWLVGCLVYSVKVIWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVERKLTGAHYGLRDWVMQRATAVIMLIYTVALLVVLFSLPKEYSAWQAFFSQTWVKVFT
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QVSFIAVFLHAWVGIRDLWMDYIKPFGVRLFLQVATIVWLVGCLVYSVKVIWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]