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The map label for this gene is sdhC [H]

Identifier: 161869861

GI number: 161869861

Start: 892862

End: 893239

Strand: Direct

Name: sdhC [H]

Synonym: NMCC_0892

Alternate gene names: 161869861

Gene position: 892862-893239 (Clockwise)

Preceding gene: 161869860

Following gene: 161869862

Centisome position: 41.46

GC content: 48.94

Gene sequence:

>378_bases
ATGTCTGCCAAACCGCGTCCTGTTTATCTGGATTTGCCGAACATCCGTCTGCCGATACCCGGGATAGTTTCCATCCTTCA
CCGCATCAGCGGGGTCGGGCTGTTTATTATGCTGCCTTTCCTGCTGTATTTCCTGTCCGGTACCCTGAGTCAAGAGTCTG
CATTTGAAACTTACCGTGCCATTGTTTCCCATCCTTTGGTCAAGCTGGTTTTAATCGGTGTATTGTGGGCTTATCTGCAC
CATTCTCTCGCCGGTATCCGCTTTTTATTTTTGGATGCGCACAAAGGCCTTGAGCTGAATACTGCGCGCAATACCGCTAA
AGCCGTATTTGCTTCTGCATTGGTTTTGACTGTCGTTTTGGGAGCGTTGTTATGGTAG

Upstream 100 bases:

>100_bases
TTCAAAATGGGATAAAACAGGTAAATTAACGTTTATGTAACCCAGTGTAGCAATGGGTTTACGGTTTTTGAGTCGATATA
TAACTACAGAGGAATTGACT

Downstream 100 bases:

>100_bases
AACGTAAATTGACCGGTGCCCATTACGGTTTGCGCGATTGGGTGATGCAACGTGCGACTGCGGTTATTATGTTGATTTAT
ACCGTTGCACTTTTAGTGGT

Product: succinate dehydrogenase cytochrome B subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLH
HSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGALLW

Sequences:

>Translated_125_residues
MSAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLH
HSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGALLW
>Mature_124_residues
SAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLHH
SLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGALLW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=123, Percent_Identity=39.0243902439024, Blast_Score=86, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13776; Mature: 13645

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS01000 SDH_CYT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRA
CCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IVSHPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
GALLW
HHHCC
>Mature Secondary Structure 
SAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRA
CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IVSHPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
GALLW
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]