| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is thrB [H]
Identifier: 161486660
GI number: 161486660
Start: 647582
End: 648538
Strand: Direct
Name: thrB [H]
Synonym: VV0651
Alternate gene names: 161486660
Gene position: 647582-648538 (Clockwise)
Preceding gene: 229047217
Following gene: 37678836
Centisome position: 19.3
GC content: 49.32
Gene sequence:
>957_bases ATGGCTGTGGTAGTGTACGCTCCCGCTTCTATTGGTAATGTCAGTGTTGGTTTTGATGTATTAGGGGCGGCAGTGTCGCC CATCGATGGTACTTTGCTTGGCGATCGAGTCATGGTGAAAGCGGGGAATGAGCCGTTTTCGTTAAAGACGGCGGGTAGTT TTGTCGCAAAGCTGCCAAGCGATCCGAAAGAAAACATTGTTTATGATTGCTGGCGAGTGTTTGCTCGCGAACTCGATAAA AAAGGTCTTGAGCTCAAACCGCTTGAGATGACATTAGAAAAGAACATGCCGATTGGATCTGGGCTTGGCTCTAGTGCTTG TTCTATTGTTGCCGCGTTAGATGCCCTCAATCAGTTCCATGCCAACCCACTGGATGAAATGGAATTGCTCGCACTGATGG GTGAAATGGAAGGCCAAATCTCCGGTGGAGTGCACTATGACAACGTTGCACCATGCTATTTAGGTGGCTTGCAATTGATG CTCGAAGAGCTCGGCATTATTAGCCAAGAAGTTCCGTGCTTCGATGATTGGTATTGGGTGATGGCCTACCCTGGCATTAA GGTGTCGACGGCAGAAGCGCGTGCGATTTTACCTTCTCAATACCGACGTCAAGATGTGATCGCACATGGCCGCCATTTGG CCGGCTTTATTCACGCTTGTCACTCAGGGCAGCCTGAGCTTGCCGCGAAGATGATCAAAGACGTGATCGCAGAGCCTTAT CGTGAGAAACTGCTTCCCGGTTTTGCCGATGCGCGTAAATATGCCGCTTCTGCGGGGGCATTGGCAACGGGCATTTCTGG CAGTGGGCCGACACTGTTTAGTATTTGCAAAGACCAAGATGTTGCACAGCGTGTGGCACGCTGGTTAGAACAAAATTACG TACAAAATGAAGAAGGATTCGTCCACATTTGTCGTTTAGACAAAAAGGGCTCAATTGTGACAGGAAGTGAGCTATGA
Upstream 100 bases:
>100_bases TTACGGTGCCGGTACTCAAGTGACTGCGGCAGGCGTGTTCTCAGATGTGATGCGTACTTTAGGCTGGAAATTAGGGGTTT AATCGATGAGTTCAAGCGAT
Downstream 100 bases:
>100_bases AGCTTTACAACATAAAAGAAAATGACGAACAAGTTTCCTTTGGCCAAGCCGTGCGCCAAGGGTTAGGCCGTAATCAGGGG CTATTTTTCCCAGCAGAATT
Product: homoserine kinase
Products: NA
Alternate protein names: HK; HSK [H]
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MAVVVYAPASIGNVSVGFDVLGAAVSPIDGTLLGDRVMVKAGNEPFSLKTAGSFVAKLPSDPKENIVYDCWRVFARELDK KGLELKPLEMTLEKNMPIGSGLGSSACSIVAALDALNQFHANPLDEMELLALMGEMEGQISGGVHYDNVAPCYLGGLQLM LEELGIISQEVPCFDDWYWVMAYPGIKVSTAEARAILPSQYRRQDVIAHGRHLAGFIHACHSGQPELAAKMIKDVIAEPY REKLLPGFADARKYAASAGALATGISGSGPTLFSICKDQDVAQRVARWLEQNYVQNEEGFVHICRLDKKGSIVTGSEL
Sequences:
>Translated_318_residues MAVVVYAPASIGNVSVGFDVLGAAVSPIDGTLLGDRVMVKAGNEPFSLKTAGSFVAKLPSDPKENIVYDCWRVFARELDK KGLELKPLEMTLEKNMPIGSGLGSSACSIVAALDALNQFHANPLDEMELLALMGEMEGQISGGVHYDNVAPCYLGGLQLM LEELGIISQEVPCFDDWYWVMAYPGIKVSTAEARAILPSQYRRQDVIAHGRHLAGFIHACHSGQPELAAKMIKDVIAEPY REKLLPGFADARKYAASAGALATGISGSGPTLFSICKDQDVAQRVARWLEQNYVQNEEGFVHICRLDKKGSIVTGSEL >Mature_317_residues AVVVYAPASIGNVSVGFDVLGAAVSPIDGTLLGDRVMVKAGNEPFSLKTAGSFVAKLPSDPKENIVYDCWRVFARELDKK GLELKPLEMTLEKNMPIGSGLGSSACSIVAALDALNQFHANPLDEMELLALMGEMEGQISGGVHYDNVAPCYLGGLQLML EELGIISQEVPCFDDWYWVMAYPGIKVSTAEARAILPSQYRRQDVIAHGRHLAGFIHACHSGQPELAAKMIKDVIAEPYR EKLLPGFADARKYAASAGALATGISGSGPTLFSICKDQDVAQRVARWLEQNYVQNEEGFVHICRLDKKGSIVTGSEL
Specific function: Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate [H]
COG id: COG0083
COG function: function code E; Homoserine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GHMP kinase family. Homoserine kinase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786184, Length=311, Percent_Identity=70.096463022508, Blast_Score=451, Evalue=1e-128,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006204 - InterPro: IPR013750 - InterPro: IPR006203 - InterPro: IPR000870 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF08544 GHMP_kinases_C; PF00288 GHMP_kinases_N [H]
EC number: =2.7.1.39 [H]
Molecular weight: Translated: 34316; Mature: 34185
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00627 GHMP_KINASES_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVVVYAPASIGNVSVGFDVLGAAVSPIDGTLLGDRVMVKAGNEPFSLKTAGSFVAKLPS CEEEEEECCCCCCCEECHHHHHHHCCCCCCCEECCEEEEEECCCCCEEEHHHHHHHHCCC DPKENIVYDCWRVFARELDKKGLELKPLEMTLEKNMPIGSGLGSSACSIVAALDALNQFH CCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC ANPLDEMELLALMGEMEGQISGGVHYDNVAPCYLGGLQLMLEELGIISQEVPCFDDWYWV CCCHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE MAYPGIKVSTAEARAILPSQYRRQDVIAHGRHLAGFIHACHSGQPELAAKMIKDVIAEPY EECCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHH REKLLPGFADARKYAASAGALATGISGSGPTLFSICKDQDVAQRVARWLEQNYVQNEEGF HHHHCCCHHHHHHHHHHCCHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCE VHICRLDKKGSIVTGSEL EEEEEECCCCCEECCCCC >Mature Secondary Structure AVVVYAPASIGNVSVGFDVLGAAVSPIDGTLLGDRVMVKAGNEPFSLKTAGSFVAKLPS EEEEEECCCCCCCEECHHHHHHHCCCCCCCEECCEEEEEECCCCCEEEHHHHHHHHCCC DPKENIVYDCWRVFARELDKKGLELKPLEMTLEKNMPIGSGLGSSACSIVAALDALNQFH CCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC ANPLDEMELLALMGEMEGQISGGVHYDNVAPCYLGGLQLMLEELGIISQEVPCFDDWYWV CCCHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE MAYPGIKVSTAEARAILPSQYRRQDVIAHGRHLAGFIHACHSGQPELAAKMIKDVIAEPY EECCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHH REKLLPGFADARKYAASAGALATGISGSGPTLFSICKDQDVAQRVARWLEQNYVQNEEGF HHHHCCCHHHHHHHHHHCCHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCE VHICRLDKKGSIVTGSEL EEEEEECCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]