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The map label for this gene is rarD [C]

Identifier: 16124509

GI number: 16124509

Start: 267164

End: 268066

Strand: Direct

Name: rarD [C]

Synonym: CC_0254

Alternate gene names: 16124509

Gene position: 267164-268066 (Clockwise)

Preceding gene: 16124508

Following gene: 16124515

Centisome position: 6.65

GC content: 67.11

Gene sequence:

>903_bases
ATGCCCCCCCATTCACAGACAGAGAGCCGCTCGGCCTACGCCGCCGGCGTCGGGTGTTACCTGCTGTGGGGCTTCCTACC
GCTCTACTTCCACCTGCTGGCCAAGCTGGGCGTCACCTCGTGGGAGATGATCGCCCACCGGTCGCTGTGGTCGGTGCTGT
GGGCGCTGGGTCTTGTGCTGATCGCCAGACAGGTCGGACAGGTCGCCCAAGTGCTGCGCCAGCCCAAGACGCTGGGCGTG
CTGGCGCTCACGACCCTGGCGATCTTCAGCAACTGGACGATCTACGTCTTCGCCGTGAACGCAGGCCACGTGATCGAGGC
CAGCCTCGGCTATTACATCAATCCGCTGATGAACATGGCGGCCGGCGCGCTGCTGTTCCGCGAGCGGATGTCCACGGAGG
GCAAGGTGGCGATCGGCTTGGCCGCTGTGGGCGTGGCTATCCAGACGGTGGCCCTGGGTCACCTGCCGATCGTCTCGCTG
GGTCTGGCCCTGACCTTCTGCGTCTATGCCATCCTGCGCAAGCAGGTGAAGGCCGACGCCCAGACCGGCCTTTTCATCGA
GTGCGCCTATCTGGCGCTGCCGGGCCTGGCCTATGTCTGGTTCCTGCAATCGAGCGGCCAGGGCCATTTCGGCGATGGCG
CCAGTGTGACGACGCTGTTGGCGCTGGCGGGCCCGGCTACGGTGGTTCCTCTGGCCCTGTTCGCCTGGTCGGCGCGCCGC
CTGCCGCTCAGCGCGGTGGGGTTCCTGCAGTTCATCGCGCCCACGATCCAGTTCCTGCTGGGCGTGGCGTTCGGCGAGCC
GTTCACCCCGCTGCGGGCGCTGTCGTTCGTGTTCATCTGGCTGGGCGTGGCGACTTTCGCCTACGGGGCTTGGCGCAAGG
CCAAGGCGCTTTCGCCCGCCTAG

Upstream 100 bases:

>100_bases
CGGATTTCCTGGTCGCAAACCCAGAATTTCCCAACTCTCCGCAAGATGCGGGCGGATGGCGGGCTTCCTACTTGCGAGAA
GCGCCCGAGAGGTTTGGTCC

Downstream 100 bases:

>100_bases
AGGCTGGCGTACGCCGCCTCGATCAGGCGCACCGACCGGGGATCGCCGATCAGCGCATTGCCCTGCTTGTTCATCACATA
GGCGCCCGACACGCCGCGCG

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MPPHSQTESRSAYAAGVGCYLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVLIARQVGQVAQVLRQPKTLGV
LALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMAAGALLFRERMSTEGKVAIGLAAVGVAIQTVALGHLPIVSL
GLALTFCVYAILRKQVKADAQTGLFIECAYLALPGLAYVWFLQSSGQGHFGDGASVTTLLALAGPATVVPLALFAWSARR
LPLSAVGFLQFIAPTIQFLLGVAFGEPFTPLRALSFVFIWLGVATFAYGAWRKAKALSPA

Sequences:

>Translated_300_residues
MPPHSQTESRSAYAAGVGCYLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVLIARQVGQVAQVLRQPKTLGV
LALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMAAGALLFRERMSTEGKVAIGLAAVGVAIQTVALGHLPIVSL
GLALTFCVYAILRKQVKADAQTGLFIECAYLALPGLAYVWFLQSSGQGHFGDGASVTTLLALAGPATVVPLALFAWSARR
LPLSAVGFLQFIAPTIQFLLGVAFGEPFTPLRALSFVFIWLGVATFAYGAWRKAKALSPA
>Mature_299_residues
PPHSQTESRSAYAAGVGCYLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVLIARQVGQVAQVLRQPKTLGVL
ALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMAAGALLFRERMSTEGKVAIGLAAVGVAIQTVALGHLPIVSLG
LALTFCVYAILRKQVKADAQTGLFIECAYLALPGLAYVWFLQSSGQGHFGDGASVTTLLALAGPATVVPLALFAWSARRL
PLSAVGFLQFIAPTIQFLLGVAFGEPFTPLRALSFVFIWLGVATFAYGAWRKAKALSPA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=285, Percent_Identity=37.1929824561403, Blast_Score=186, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32183; Mature: 32052

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPHSQTESRSAYAAGVGCYLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IARQVGQVAQVLRQPKTLGVLALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEHHHHHHHHHHHHHH
AGALLFRERMSTEGKVAIGLAAVGVAIQTVALGHLPIVSLGLALTFCVYAILRKQVKADA
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QTGLFIECAYLALPGLAYVWFLQSSGQGHFGDGASVTTLLALAGPATVVPLALFAWSARR
CCCHHEEHHHHHHCHHHHHHEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCC
LPLSAVGFLQFIAPTIQFLLGVAFGEPFTPLRALSFVFIWLGVATFAYGAWRKAKALSPA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PPHSQTESRSAYAAGVGCYLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IARQVGQVAQVLRQPKTLGVLALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEHHHHHHHHHHHHHH
AGALLFRERMSTEGKVAIGLAAVGVAIQTVALGHLPIVSLGLALTFCVYAILRKQVKADA
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QTGLFIECAYLALPGLAYVWFLQSSGQGHFGDGASVTTLLALAGPATVVPLALFAWSARR
CCCHHEEHHHHHHCHHHHHHEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCC
LPLSAVGFLQFIAPTIQFLLGVAFGEPFTPLRALSFVFIWLGVATFAYGAWRKAKALSPA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]