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The map label for this gene is 16124504

Identifier: 16124504

GI number: 16124504

Start: 260971

End: 261561

Strand: Direct

Name: 16124504

Synonym: CC_0249

Alternate gene names: NA

Gene position: 260971-261561 (Clockwise)

Preceding gene: 16124501

Following gene: 16124505

Centisome position: 6.5

GC content: 63.96

Gene sequence:

>591_bases
ATGCCCCGCCATCGTCTTGTACTCATTCTAGCGTGCGTCGTAGGCCTCGCGGTCGCTGTCGGCCTCGCCTGGAACGTCGG
CGTCTTCCGTTCGGAACCCGCCGTGACCGTGGGCGGTCCGTTCGAACTGGTTGACCAGAACGGCGCGCCGACCAGCGAAA
AGGCCCTGAAAGGCAAGTGGAGCGCGGTTTTCTTCGGCTTCACCTATTGTCCCGACGTCTGTCCTGGGACGCTGCAGGGT
CTGGCGGCCGCGACCGACCAGTTGGGTCCGAAGGCCAAGGACTTCCAGATCGTCTTCATCTCGATCGACCCCGCCCGCGA
CACCGTGAAGCAGATGAAGGCCTATCTCTCGGCCCCCTATGTGCCGAAGGCCACCATCGGTCTCACCGGGACCCAGGCGC
AGGTGGACGCGGCCGCCAAGGCCTATCGGGTCTACCACGCCAAGGTCGGAGACGGCGTGGACTACACCATGGACCATTCC
ACGGCGATTTACCTGATGGACCCCAAAGGCCGCTTCAAGACGGTGATCCCCTACAACCTGCCGCCCGACGAGATCGCTCG
TCGCATCAAGGATGCGGTTCGCGAGGGCTGA

Upstream 100 bases:

>100_bases
TGACGTTGATCGTCGGGCGCTCTCGCAAACGAAACGTCAGCCATGGCCGCAGAATTGTCCAGAATTGCGCGCGTGGCGAG
AGTAAAAGGATGAACCGCGC

Downstream 100 bases:

>100_bases
TCCGGCGTAAAAATTCGCGATCGGCTGGACTTTGTTAGGCTTCGGCGTGTTATGTTGCGTTGCAACATAGCGGATACGCC
ATGCTCTACGCCCTGCACGA

Product: SCO1/2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MPRHRLVLILACVVGLAVAVGLAWNVGVFRSEPAVTVGGPFELVDQNGAPTSEKALKGKWSAVFFGFTYCPDVCPGTLQG
LAAATDQLGPKAKDFQIVFISIDPARDTVKQMKAYLSAPYVPKATIGLTGTQAQVDAAAKAYRVYHAKVGDGVDYTMDHS
TAIYLMDPKGRFKTVIPYNLPPDEIARRIKDAVREG

Sequences:

>Translated_196_residues
MPRHRLVLILACVVGLAVAVGLAWNVGVFRSEPAVTVGGPFELVDQNGAPTSEKALKGKWSAVFFGFTYCPDVCPGTLQG
LAAATDQLGPKAKDFQIVFISIDPARDTVKQMKAYLSAPYVPKATIGLTGTQAQVDAAAKAYRVYHAKVGDGVDYTMDHS
TAIYLMDPKGRFKTVIPYNLPPDEIARRIKDAVREG
>Mature_195_residues
PRHRLVLILACVVGLAVAVGLAWNVGVFRSEPAVTVGGPFELVDQNGAPTSEKALKGKWSAVFFGFTYCPDVCPGTLQGL
AAATDQLGPKAKDFQIVFISIDPARDTVKQMKAYLSAPYVPKATIGLTGTQAQVDAAAKAYRVYHAKVGDGVDYTMDHST
AIYLMDPKGRFKTVIPYNLPPDEIARRIKDAVREG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=162, Percent_Identity=38.2716049382716, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI281182727, Length=161, Percent_Identity=37.888198757764, Blast_Score=107, Evalue=5e-24,
Organism=Homo sapiens, GI281182722, Length=161, Percent_Identity=37.888198757764, Blast_Score=107, Evalue=5e-24,
Organism=Homo sapiens, GI281182716, Length=161, Percent_Identity=37.888198757764, Blast_Score=107, Evalue=5e-24,
Organism=Homo sapiens, GI153791313, Length=161, Percent_Identity=37.888198757764, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17531419, Length=160, Percent_Identity=36.25, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6319498, Length=169, Percent_Identity=42.0118343195266, Blast_Score=127, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6319511, Length=166, Percent_Identity=41.566265060241, Blast_Score=115, Evalue=3e-27,
Organism=Drosophila melanogaster, GI19920710, Length=157, Percent_Identity=37.5796178343949, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21099; Mature: 20967

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRHRLVLILACVVGLAVAVGLAWNVGVFRSEPAVTVGGPFELVDQNGAPTSEKALKGKW
CCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCEEEECCCCCCCCHHHHCCCC
SAVFFGFTYCPDVCPGTLQGLAAATDQLGPKAKDFQIVFISIDPARDTVKQMKAYLSAPY
EEEEEEEHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCC
VPKATIGLTGTQAQVDAAAKAYRVYHAKVGDGVDYTMDHSTAIYLMDPKGRFKTVIPYNL
CCCEEEECCCCHHHHHHHHHHHHEEEEECCCCCCEEECCCEEEEEECCCCCEEEEECCCC
PPDEIARRIKDAVREG
CHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PRHRLVLILACVVGLAVAVGLAWNVGVFRSEPAVTVGGPFELVDQNGAPTSEKALKGKW
CCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCEEEECCCCCCCCHHHHCCCC
SAVFFGFTYCPDVCPGTLQGLAAATDQLGPKAKDFQIVFISIDPARDTVKQMKAYLSAPY
EEEEEEEHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCC
VPKATIGLTGTQAQVDAAAKAYRVYHAKVGDGVDYTMDHSTAIYLMDPKGRFKTVIPYNL
CCCEEEECCCCHHHHHHHHHHHHEEEEECCCCCCEEECCCEEEEEECCCCCEEEEECCCC
PPDEIARRIKDAVREG
CHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA