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Identifier: 16120310

GI number: 16120310

Start: 329196

End: 329609

Strand: Direct

Name: Not Available

Synonym: VNG6437C

Alternate gene names: NA

Gene position: 329196-329609 (Clockwise)

Preceding gene: 16120309

Following gene: 16120311

Centisome position: 90.09

GC content: 58.45

Gene sequence:

>414_bases
ATGGAGATTCCATCGCAACTGCGGTGTCTGTTCGCTGGCGCTATCGAACAGCAAGACGGGACGTATCTCATTGAGGTACC
GGAGCACGAGATTGAGCTTGGTGAACTGCAGTCCGGTGAGACGTACCGCGTGGCTATGCTCGAATCACCAGCCACCGACG
ACGCTGACGAGCCCACTCCCGACTCACAGCGTGAGCGGACGCCCAGCACGCCACCTGTTGAGGAAGGTGACCAGCGAACC
GTCGAAATCGAGGATATTGGTGAGCAGGGAGACGGCATCACGCGTGTCGAGCGTGGCTTCGTCGTCATCGTCCCGGATAC
CGAGTCCGGCGAGCGTGTAACCATTGAAATTACTGAGGTCGCTGAAACCGTGGCCTTTGCCGACGTCGTCGAACGTGAGC
ACTATGACGACTAA

Upstream 100 bases:

>100_bases
CTGGGCGGAGTGCCCAGCATGCGAGGCTGTCGTCGCCCCAGAGTAACCAGACAGCACCCTCAAGTGGCCGTCACGTCGTA
TCTCGACCAGAACACGAATC

Downstream 100 bases:

>100_bases
CAATTCCACCGTCCGATCTCTGTCGTAGCGAGTGCTGGCCCGGGAGTTCGTACTAGTAGACGATCGATGTATCCTCTGTA
CGTAGTGGGATATACTTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MEIPSQLRCLFAGAIEQQDGTYLIEVPEHEIELGELQSGETYRVAMLESPATDDADEPTPDSQRERTPSTPPVEEGDQRT
VEIEDIGEQGDGITRVERGFVVIVPDTESGERVTIEITEVAETVAFADVVEREHYDD

Sequences:

>Translated_137_residues
MEIPSQLRCLFAGAIEQQDGTYLIEVPEHEIELGELQSGETYRVAMLESPATDDADEPTPDSQRERTPSTPPVEEGDQRT
VEIEDIGEQGDGITRVERGFVVIVPDTESGERVTIEITEVAETVAFADVVEREHYDD
>Mature_137_residues
MEIPSQLRCLFAGAIEQQDGTYLIEVPEHEIELGELQSGETYRVAMLESPATDDADEPTPDSQRERTPSTPPVEEGDQRT
VEIEDIGEQGDGITRVERGFVVIVPDTESGERVTIEITEVAETVAFADVVEREHYDD

Specific function: Unknown

COG id: COG3269

COG function: function code R; Predicted RNA-binding protein, contains TRAM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR002792 [H]

Pfam domain/function: PF01938 TRAM [H]

EC number: NA

Molecular weight: Translated: 15220; Mature: 15220

Theoretical pI: Translated: 3.70; Mature: 3.70

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIPSQLRCLFAGAIEQQDGTYLIEVPEHEIELGELQSGETYRVAMLESPATDDADEPTP
CCCCHHHHHHHHHCEECCCCEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCC
DSQRERTPSTPPVEEGDQRTVEIEDIGEQGDGITRVERGFVVIVPDTESGERVTIEITEV
CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCEEEEEEHHH
AETVAFADVVEREHYDD
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIPSQLRCLFAGAIEQQDGTYLIEVPEHEIELGELQSGETYRVAMLESPATDDADEPTP
CCCCHHHHHHHHHCEECCCCEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCC
DSQRERTPSTPPVEEGDQRTVEIEDIGEQGDGITRVERGFVVIVPDTESGERVTIEITEV
CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCEEEEEEHHH
AETVAFADVVEREHYDD
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]