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The map label for this gene is ugpB

Identifier: 16120195

GI number: 16120195

Start: 213229

End: 214620

Strand: Direct

Name: ugpB

Synonym: VNG6277G

Alternate gene names: 16120195

Gene position: 213229-214620 (Clockwise)

Preceding gene: 16120191

Following gene: 16120196

Centisome position: 58.35

GC content: 63.36

Gene sequence:

>1392_bases
ATGGCGCCCACCACAGAGACACGGAGAGCCACAGCGACACGACGCGCAGTCCTCGCCGGTGCCGGCACGGCCGGACTCAC
AGCATTCGCCGGTTGTGGCGCACTCAACACAGCCACAACCCAATCGGATACCGGCTCCAGCACCATCACGCTGGACTTCT
GGCACGTTTTCGGCGACGAACTGGCGACCACAATCGAGCAGATGGCAGCGGATTTCTCAGCACAGACCGACGGTGTCTCG
ATCAACCCCGTGAGCAAGACCGGCTACCGTGAGACGCTCAACCAGTCCCTCCAGGCGTCGCGGGCCGGCGATCCCCCGGG
GATCGTCCAACTCTTCGAGATCGGGACCCGAATCGCCCTCGACAGCAACGCGTTCACTCCCATCGACTCCCTGCTCCCCG
AAGACAAAATCGACCGCGAGGACTTCCTCCCGTCGGTCCTCAACTACTACCGCACCGATGGCACGCTCAACTCGATGCCG
TTCAACTCCTCGAACACCATCATGCTCTACAACAAGCGTGCCTTCGAGGCGGCTGGGCTCGATCCGAACGCCCCGCCGAC
GACGCTTGCCGAACTCCGGACAGCGGCCAGCACCATTGTTTCGAACACGCAACTAGAGTACGGCCTCACCTGGCCGAATC
ACTCGTGGATGCAGATCGAACAGCAGTTCGCGAAGCAAAACCAACTCCTGGTCAACAACGACAACGGCCGTGCCGGCCGA
CCCACGGAGACTAACTTCGACAGCGACGCCGGACGCGCGGTCTACCAGTGGTGGACCGACATGGCCAACGCCGACCTCTA
TTTGAACCCCGGGATCGAGGCGTGGGACGAGGCCCGACAGGCGTTTCTCACCGAGCAAGCGGCGATGCTGTGGGATTCCA
CGTCGAATCTGGTCTCGCTGGTGGCCGGTGCAAAGCAGCGCGGCTTCGAACTCGGATCCGCATACCTCCCAACCCCGACC
GGAGACAACTCAGGCGTCGTCATCGGTGGCGGCTCACTGTGGGTTCCGGACGCACTGACGACTGCGGAGAAACAGGCCGC
CGGTGCGTTCATCGCGTATCTCACCCAGCCCGACCAGCAGCTGCGGTGGCACCGCAACAGCGGCTACTTCCCGGTGCGAC
AGAGCGTCATCGACCGGCTCACGGACGACGGCTGGTTCGACGAACACCCGAACTTCCGCACGGCCTTCGACCAACTCCAG
GAGACCACCGACACACCGGCAACGCGCGGCGCAGTCATGGGCGCGTTCCCGGAAGTCCGAACGATCAACGAGGAGCTCTC
GGTCAGCATCATCACCGGTGACATGTCCGTTTCGGCGGGCCTCGCAGAGATGGACACCCAAGCGACCAGCGCCATCCAGG
ACTACACCGACTCCATCGACGACAGCGCGTAA

Upstream 100 bases:

>100_bases
CGCCGCCCCATGCACGGCTCAATAGGTCTCCAGAACTGTCTGGACGGATATTTTCAACTCATATAAGCACTCATCCGAGG
ACCCCGAGTTGCGTTATCCG

Downstream 100 bases:

>100_bases
CCCGACCACCCATGTCCACACAGCCAACCCCATTCGATTCGACACTGCAGGCCCTGGGACTGCTGCTCCCCTCCGTGGTC
GTGCTCGGTGCGTTCCTCTA

Product: glycerol-3-phosphate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MAPTTETRRATATRRAVLAGAGTAGLTAFAGCGALNTATTQSDTGSSTITLDFWHVFGDELATTIEQMAADFSAQTDGVS
INPVSKTGYRETLNQSLQASRAGDPPGIVQLFEIGTRIALDSNAFTPIDSLLPEDKIDREDFLPSVLNYYRTDGTLNSMP
FNSSNTIMLYNKRAFEAAGLDPNAPPTTLAELRTAASTIVSNTQLEYGLTWPNHSWMQIEQQFAKQNQLLVNNDNGRAGR
PTETNFDSDAGRAVYQWWTDMANADLYLNPGIEAWDEARQAFLTEQAAMLWDSTSNLVSLVAGAKQRGFELGSAYLPTPT
GDNSGVVIGGGSLWVPDALTTAEKQAAGAFIAYLTQPDQQLRWHRNSGYFPVRQSVIDRLTDDGWFDEHPNFRTAFDQLQ
ETTDTPATRGAVMGAFPEVRTINEELSVSIITGDMSVSAGLAEMDTQATSAIQDYTDSIDDSA

Sequences:

>Translated_463_residues
MAPTTETRRATATRRAVLAGAGTAGLTAFAGCGALNTATTQSDTGSSTITLDFWHVFGDELATTIEQMAADFSAQTDGVS
INPVSKTGYRETLNQSLQASRAGDPPGIVQLFEIGTRIALDSNAFTPIDSLLPEDKIDREDFLPSVLNYYRTDGTLNSMP
FNSSNTIMLYNKRAFEAAGLDPNAPPTTLAELRTAASTIVSNTQLEYGLTWPNHSWMQIEQQFAKQNQLLVNNDNGRAGR
PTETNFDSDAGRAVYQWWTDMANADLYLNPGIEAWDEARQAFLTEQAAMLWDSTSNLVSLVAGAKQRGFELGSAYLPTPT
GDNSGVVIGGGSLWVPDALTTAEKQAAGAFIAYLTQPDQQLRWHRNSGYFPVRQSVIDRLTDDGWFDEHPNFRTAFDQLQ
ETTDTPATRGAVMGAFPEVRTINEELSVSIITGDMSVSAGLAEMDTQATSAIQDYTDSIDDSA
>Mature_462_residues
APTTETRRATATRRAVLAGAGTAGLTAFAGCGALNTATTQSDTGSSTITLDFWHVFGDELATTIEQMAADFSAQTDGVSI
NPVSKTGYRETLNQSLQASRAGDPPGIVQLFEIGTRIALDSNAFTPIDSLLPEDKIDREDFLPSVLNYYRTDGTLNSMPF
NSSNTIMLYNKRAFEAAGLDPNAPPTTLAELRTAASTIVSNTQLEYGLTWPNHSWMQIEQQFAKQNQLLVNNDNGRAGRP
TETNFDSDAGRAVYQWWTDMANADLYLNPGIEAWDEARQAFLTEQAAMLWDSTSNLVSLVAGAKQRGFELGSAYLPTPTG
DNSGVVIGGGSLWVPDALTTAEKQAAGAFIAYLTQPDQQLRWHRNSGYFPVRQSVIDRLTDDGWFDEHPNFRTAFDQLQE
TTDTPATRGAVMGAFPEVRTINEELSVSIITGDMSVSAGLAEMDTQATSAIQDYTDSIDDSA

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=404, Percent_Identity=28.960396039604, Blast_Score=175, Evalue=7e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 50197; Mature: 50065

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTTETRRATATRRAVLAGAGTAGLTAFAGCGALNTATTQSDTGSSTITLDFWHVFGDE
CCCCCCHHHHHHHHHHHEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
LATTIEQMAADFSAQTDGVSINPVSKTGYRETLNQSLQASRAGDPPGIVQLFEIGTRIAL
HHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEE
DSNAFTPIDSLLPEDKIDREDFLPSVLNYYRTDGTLNSMPFNSSNTIMLYNKRAFEAAGL
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHCCCC
DPNAPPTTLAELRTAASTIVSNTQLEYGLTWPNHSWMQIEQQFAKQNQLLVNNDNGRAGR
CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCC
PTETNFDSDAGRAVYQWWTDMANADLYLNPGIEAWDEARQAFLTEQAAMLWDSTSNLVSL
CCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VAGAKQRGFELGSAYLPTPTGDNSGVVIGGGSLWVPDALTTAEKQAAGAFIAYLTQPDQQ
HHHHHHCCCCCCCEECCCCCCCCCEEEEECCCEECCCHHHHHHHHHCCEEEEEECCCHHH
LRWHRNSGYFPVRQSVIDRLTDDGWFDEHPNFRTAFDQLQETTDTPATRGAVMGAFPEVR
HHEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCHH
TINEELSVSIITGDMSVSAGLAEMDTQATSAIQDYTDSIDDSA
HCCCCEEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
APTTETRRATATRRAVLAGAGTAGLTAFAGCGALNTATTQSDTGSSTITLDFWHVFGDE
CCCCCHHHHHHHHHHHEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
LATTIEQMAADFSAQTDGVSINPVSKTGYRETLNQSLQASRAGDPPGIVQLFEIGTRIAL
HHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEE
DSNAFTPIDSLLPEDKIDREDFLPSVLNYYRTDGTLNSMPFNSSNTIMLYNKRAFEAAGL
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHCCCC
DPNAPPTTLAELRTAASTIVSNTQLEYGLTWPNHSWMQIEQQFAKQNQLLVNNDNGRAGR
CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCC
PTETNFDSDAGRAVYQWWTDMANADLYLNPGIEAWDEARQAFLTEQAAMLWDSTSNLVSL
CCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VAGAKQRGFELGSAYLPTPTGDNSGVVIGGGSLWVPDALTTAEKQAAGAFIAYLTQPDQQ
HHHHHHCCCCCCCEECCCCCCCCCEEEEECCCEECCCHHHHHHHHHCCEEEEEECCCHHH
LRWHRNSGYFPVRQSVIDRLTDDGWFDEHPNFRTAFDQLQETTDTPATRGAVMGAFPEVR
HHEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCHH
TINEELSVSIITGDMSVSAGLAEMDTQATSAIQDYTDSIDDSA
HCCCCEEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA