Definition Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence.
Accession NC_002608
Length 365,425

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16119983

GI number: 16119983

Start: 1905

End: 3719

Strand: Reverse

Name: Not Available

Synonym: VNG6007H

Alternate gene names: NA

Gene position: 3719-1905 (Counterclockwise)

Preceding gene: 16119986

Following gene: 16119982

Centisome position: 1.02

GC content: 61.54

Gene sequence:

>1815_bases
ATGACGTTCCGCGAGATGGTGGACGGCGCACTCAAAACCTACCCCCGCGAACAACAAGTCCGCCATAACCGCTCGGTCAC
GTTAGAGGACCTCGTCACTGAAGTGCCCGTCACGTACCTCCGGTTCTACGACGAGTACGACCACGATCAGGGCCACCCGA
AACCCTGGGGTGCCGTCTTCCGCGCGCACGTCCTCCGATGCGTCAAAGGCTGGAAGAACGCGACCGCGCTCCATCGCTAC
CTGAAACAGCAGCCGTTTCTCTGCACGCAGTTGGGCTTCAAAGACATTCCCGACCAGTCCACACTCTACCGCGCGTGGGA
CGACCGTCTCGAAGATGTCCACGACGCAGTACGAGACGCCGCCGAGGTCGTCGTGGACATCGCCCGCTACCACGACATCC
CCGCGCCCGAACCCGAGTTCCTCCCCGATCAGCCAACCGATACGGTGACGAACTCAAAGAGCAAGGACACGCTCGCCCGT
GAGAAAGCCCGTGAGGTTTGGAAGGGCGCGAAGCCCATCGTCGAGGACGCCTTCCATCTGGACCGCAGCGACAACGCCTC
GATTCCCGAGGGCGCGTTCTGGGAGCAACAGTCCTACCTCGGAATGCGAACGGATATGCACCCGAACGACGGCGCACAGT
CCTTCGCTGCGGACTCCACCCGCAGAAAGACGCCATCAGGCGACTCCCACCGGTTGCAGACGAAGACGCTCGGCGTTGAG
CGCATCCGGACGATGCTCCGGGAGACTGGCCGGACGCTTGTGGCGCGAGCGAAATCGAAGGACAAGATGGGGCGCAAGCA
GATGACGGCCATCGACTTCACGAAGGGCAACCCGTGGAGCGGCCACGTGGAACGCGATAGTAGTGGACAGAATCAGGAGC
CGTGGATTCTCGGCTACAAGGGCGATGACGGGCCGTTCTTCCAGTGGGCAGTCATCAAACTCGTCGGCCACGACGTCCCG
CTGATCCTTGATGCCGTCCCGGTTGTTCGTGGTCGAAAGCGAGCGGATATCGTAGACGATCTCCTCGAAGGCGCAACCGA
CATCGTCCCTGGACTCGATTTGGTGATGATGGACCGCGAGTTCGCCCCGGACGGCGTCAAAGACGTCTGCGAGACGCACG
ACGTCCACTACCTCAACCCCGGTGTCGTCCGGTCCAGCAGCGACCACGAACACCAGATCGCTAAGCTTGCCAGTGAAGAC
AAAGACTTCGATGTCATCAAGCAGGAGCGATTGGACGACGGTCCGACGCGGAAGGCGGTTTACCTCCCGAAGCGCGAGTG
GGAACGCGAGGACGAAGACAACGACGGGACGGATGTGACGATCCGACAGGAACTCATCGAGGACTTCAAGGACGTCGGCA
ACACGACGCCGCTCTCGGAGGACCGCGACGGCGACTCGCCGCTGAGCAACCTTCTCAATGAGGTCGCCGAAGAGGAGGAG
ATCGACGAGCCAGCGCGGGTCGAAGCGCCGACCCTGCCCTTTGAGACGAATCTCCCGTGGGTGGATGTCGATCCCGCCGA
CCAGCAGGAGATGAAACACCAGATTGGGCGACTGATGGCCCGATACAAGCGGCGTTGGGGTATCGAGAACGGCTTCAAGA
AACTGAAGACGTTCCTCGCAGAGACGCAGTCGCCCGACCACCGGTTCCGGTACTTCAACTTCGCGTTCGCCTGCGTGCTG
TACAACTGCTGGCGACTTGTGGACATCCTCGTGCAGTTGGAACTGTACGGCGAGATCGGCGATCAGCCGGCAGTGTCCTC
GAACTCGTTCCTGACGTTCGCCAAGAAAAGCTACGGCCTCGACCCGCCCGACTAA

Upstream 100 bases:

>100_bases
TATCGAGAGTGCCAGCTACGAATCCACACCAAGAGATTACCCCGTAGACGGCCTCTACGGCTCTGACGACGGCACTCTCG
TCCGCGCGGCCTCATTCGAT

Downstream 100 bases:

>100_bases
CTCTCTCATTCCTCTGGGCTTGCTCGGTCGTGAGCGGCAGCGCTGTCCTAAACGCCGATTTTCCACTGGATTTGTGAGCG
CTATCCGACAGGTTCCTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Transposase; Transposase Family Protein; Transposase Homolog

Number of amino acids: Translated: 604; Mature: 603

Protein sequence:

>604_residues
MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRY
LKQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAR
EKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVE
RIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYKGDDGPFFQWAVIKLVGHDVP
LILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED
KDFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEE
IDEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVL
YNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGLDPPD

Sequences:

>Translated_604_residues
MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRY
LKQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAR
EKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVE
RIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYKGDDGPFFQWAVIKLVGHDVP
LILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED
KDFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEE
IDEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVL
YNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGLDPPD
>Mature_603_residues
TFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRYL
KQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLARE
KAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVER
IRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYKGDDGPFFQWAVIKLVGHDVPL
ILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASEDK
DFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEEI
DEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVLY
NCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGLDPPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69092; Mature: 68961

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVF
CCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RAHVLRCVKGWKNATALHRYLKQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDA
HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHC
DRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVE
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCHHHHHHHHH
RIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK
HHHHHHHHHCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDRE
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
FAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASEDKDFDVIKQERLDDGPTRKAV
CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEE
YLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEE
ECCHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
IDEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLA
CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHCCC
DPPD
CCCC
>Mature Secondary Structure 
TFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVF
CHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RAHVLRCVKGWKNATALHRYLKQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDA
HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHC
DRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVE
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCHHHHHHHHH
RIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK
HHHHHHHHHCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDRE
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
FAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASEDKDFDVIKQERLDDGPTRKAV
CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEE
YLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEE
ECCHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
IDEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLA
CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHCCC
DPPD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA