| Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
|---|---|
| Accession | NC_003065 |
| Length | 214,233 |
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The map label for this gene is hyuB
Identifier: 16119835
GI number: 16119835
Start: 33744
End: 35699
Strand: Direct
Name: hyuB
Synonym: Atu6023
Alternate gene names: NA
Gene position: 33744-35699 (Clockwise)
Preceding gene: 16119834
Following gene: 159161955
Centisome position: 15.75
GC content: 60.07
Gene sequence:
>1956_bases ATGGATGCCGTTCGTACTGCCGTCATGAACAATCGCTTCAACGCGATTGTCGAAGAAGCCTCTGCCGCGATCTACCGCAC CGCCCATACGACTTTTGTTAAGATCGTCCAGGATTACCAGTGTGCGATTGCGACTGCCGAAGGCGAAATGTTCGCTTATC CGATGTTGTCTGGCGTCAATGTCTTCGTCGGCTCCCCGTTGAAGCCGACGCTGGATGCCATCGGCCGGGAGAACCTGAAG CCAGGCGATATCATCATCACCAACGATCCCTTTGCCACGGACGGTCTGGTGACGCACCTGATGGACGTTACGCTGCTTTA TCCGATCTTCTTCGACGAGAAGCTGATCGCGATCGGCTGGGCATTTGTCCATGCGTCCGATATCGGCGGCGCCGTTCCGG GAAGTATCTCGCCAGCCTTCACGGAAGTATTCCAGGAGGGCCTCCGTGTCAGGCCAATGAAGCTCTACGAAGGAGGGGTG TTGAACGAAGCGATCAAGTCGATCTTCCAGGACAACAGCCGAATTCCGACCGAGTTGTGGGGCGACATTCAGGCCATGAT CTCGGGCCTGAAGAGCATGGACCGGCGCGTGAGCGAGCTTTGCGAGCGATATGATCGTGAGAGTGTCGAGGAGGGGATGC AGGACGTCATCAACTACGCGGAGACCAAGGCCCGCGCGGTGATCAGGACGATTCGAGACGGTGTCTATACCTTCTCGGAC TATCTTGAAGGGATCCATGATGGTCAGCTGGCCTATTTCAGCGTGACCATGACGGTGAAGGACAGCGAGATCGAGGTTGA TTTTACCGGCACGGATCCGCAATTGGCGGCCGCCTACAACCTGGTAACGGGGGCAACCACCCACCCCTACATTATCCAGT GCCTTTACGCCTACATCCTGACCGTTGATCCGCTGACGCCGCGCAACTCCGGTATCTTGCGGGCGATCCACGGCCATGCT CCGCGTGGCACGGTTCTCAACGCGGTCTATCCCGCTTCCGGCGGGTCTCGTGCTGCATCAGCGACACGCGCCTACGACGT TATCCTGGGGTGCCTCAATCAGGCACTACCGGAGGGCCTTGCCGCAGCCGGTGGCGGTATGAGCGGGGTTATCGTCGTTT CGGCTCCCGATCCTCGTACAGGCCGTGACCGTGTCAACGTGGTGGGTACGATCGACGGCGGCGGCGGTGCCCGCCGTGGC GTTGACGGCCTGGACGGATCGGAAGTACGCTACTCACAGCGCAGCGTGCCAGTCGAAGTCATCGAGATCGAAACGGTGCT AGTCATGCGGGCGCTCCGCCTCGTGCCGGACAGTCGCCGCGCGGGAAGGTTCGCCAGCGGCGCCGCGCTCGAAATTGAAA TGGAAAACACGTCAAATCGCGCGGTCATAACGGTCAGAAACCTGAACCGGTTTGTGTTCGCGCCGTGGGGCTTCAAGGGG GGAGAGATCGGTCTTCTGGGTAAGGCAGTCGTCAATCCTGGCCGACCCGATGAGCGATCGGTCGGCAAGATCTCGGTGCT GGAGCTCGGACAGGGCGATATTCTCAGGATCACCAGTTCCACAGGCGGGGCGTTCGGCGAACCTCTTGAGCGGGATGTGG CGGCGATCGCGCGCGAGATCGAAAACGGCATGCTTTCCCCGGAGCGGGCCGCCGACGTCTATGCTGTCGTCTTCGACCGG GACAGTAAGATCGACGAGGCGGCGACCGCAGAACATCGCCGCGAACGCGCAAACCGAAAGTCAGACGACTTTAATTTCTG CATCGTACGCCAGCGTCAGGACCAGGTGTGGTCGCAGCAGACACGCAGGGAACTGGCATCGCGGGCGTTGACCTATGAAC AGCGCATCCGCAGCCAGCTCGTCGATCGCGTTCATCACCGCCTGTTGGCGAAAGGTGAGCGGGTTGATGCCGGGAAACTG GATCAAGTCATTGCCGAAGAAGCCGGCCGGTTGTAG
Upstream 100 bases:
>100_bases GGCCGTCATCGAGCAGCGTGATGCGACGATCGTCGTTCCGCCAGAGTTCGTTGCCCGCGTCGGAGCCTTTGGCGCAATCC TCATGACCCGGAGCTGATCA
Downstream 100 bases:
>100_bases CGGCGATGGTCCTGTGATCGTAATCAGTTAGACTAGTGTGAACGGTCGTCTGAAAGTGCGGCTATTGGGATGCCTCCTCC AGGGGCATCCTTTGTTCATT
Product: N-methylhydantoinase B/acetone carboxylase, alpha subunit
Products: ADP; phosphate; N-carbamoylsarcosine
Alternate protein names: NA
Number of amino acids: Translated: 651; Mature: 651
Protein sequence:
>651_residues MDAVRTAVMNNRFNAIVEEASAAIYRTAHTTFVKIVQDYQCAIATAEGEMFAYPMLSGVNVFVGSPLKPTLDAIGRENLK PGDIIITNDPFATDGLVTHLMDVTLLYPIFFDEKLIAIGWAFVHASDIGGAVPGSISPAFTEVFQEGLRVRPMKLYEGGV LNEAIKSIFQDNSRIPTELWGDIQAMISGLKSMDRRVSELCERYDRESVEEGMQDVINYAETKARAVIRTIRDGVYTFSD YLEGIHDGQLAYFSVTMTVKDSEIEVDFTGTDPQLAAAYNLVTGATTHPYIIQCLYAYILTVDPLTPRNSGILRAIHGHA PRGTVLNAVYPASGGSRAASATRAYDVILGCLNQALPEGLAAAGGGMSGVIVVSAPDPRTGRDRVNVVGTIDGGGGARRG VDGLDGSEVRYSQRSVPVEVIEIETVLVMRALRLVPDSRRAGRFASGAALEIEMENTSNRAVITVRNLNRFVFAPWGFKG GEIGLLGKAVVNPGRPDERSVGKISVLELGQGDILRITSSTGGAFGEPLERDVAAIAREIENGMLSPERAADVYAVVFDR DSKIDEAATAEHRRERANRKSDDFNFCIVRQRQDQVWSQQTRRELASRALTYEQRIRSQLVDRVHHRLLAKGERVDAGKL DQVIAEEAGRL
Sequences:
>Translated_651_residues MDAVRTAVMNNRFNAIVEEASAAIYRTAHTTFVKIVQDYQCAIATAEGEMFAYPMLSGVNVFVGSPLKPTLDAIGRENLK PGDIIITNDPFATDGLVTHLMDVTLLYPIFFDEKLIAIGWAFVHASDIGGAVPGSISPAFTEVFQEGLRVRPMKLYEGGV LNEAIKSIFQDNSRIPTELWGDIQAMISGLKSMDRRVSELCERYDRESVEEGMQDVINYAETKARAVIRTIRDGVYTFSD YLEGIHDGQLAYFSVTMTVKDSEIEVDFTGTDPQLAAAYNLVTGATTHPYIIQCLYAYILTVDPLTPRNSGILRAIHGHA PRGTVLNAVYPASGGSRAASATRAYDVILGCLNQALPEGLAAAGGGMSGVIVVSAPDPRTGRDRVNVVGTIDGGGGARRG VDGLDGSEVRYSQRSVPVEVIEIETVLVMRALRLVPDSRRAGRFASGAALEIEMENTSNRAVITVRNLNRFVFAPWGFKG GEIGLLGKAVVNPGRPDERSVGKISVLELGQGDILRITSSTGGAFGEPLERDVAAIAREIENGMLSPERAADVYAVVFDR DSKIDEAATAEHRRERANRKSDDFNFCIVRQRQDQVWSQQTRRELASRALTYEQRIRSQLVDRVHHRLLAKGERVDAGKL DQVIAEEAGRL >Mature_651_residues MDAVRTAVMNNRFNAIVEEASAAIYRTAHTTFVKIVQDYQCAIATAEGEMFAYPMLSGVNVFVGSPLKPTLDAIGRENLK PGDIIITNDPFATDGLVTHLMDVTLLYPIFFDEKLIAIGWAFVHASDIGGAVPGSISPAFTEVFQEGLRVRPMKLYEGGV LNEAIKSIFQDNSRIPTELWGDIQAMISGLKSMDRRVSELCERYDRESVEEGMQDVINYAETKARAVIRTIRDGVYTFSD YLEGIHDGQLAYFSVTMTVKDSEIEVDFTGTDPQLAAAYNLVTGATTHPYIIQCLYAYILTVDPLTPRNSGILRAIHGHA PRGTVLNAVYPASGGSRAASATRAYDVILGCLNQALPEGLAAAGGGMSGVIVVSAPDPRTGRDRVNVVGTIDGGGGARRG VDGLDGSEVRYSQRSVPVEVIEIETVLVMRALRLVPDSRRAGRFASGAALEIEMENTSNRAVITVRNLNRFVFAPWGFKG GEIGLLGKAVVNPGRPDERSVGKISVLELGQGDILRITSSTGGAFGEPLERDVAAIAREIENGMLSPERAADVYAVVFDR DSKIDEAATAEHRRERANRKSDDFNFCIVRQRQDQVWSQQTRRELASRALTYEQRIRSQLVDRVHHRLLAKGERVDAGKL DQVIAEEAGRL
Specific function: Unknown
COG id: COG0146
COG function: function code EQ; N-methylhydantoinase B/acetone carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxoprolinase family [H]
Homologues:
Organism=Homo sapiens, GI48314820, Length=552, Percent_Identity=26.0869565217391, Blast_Score=126, Evalue=5e-29, Organism=Caenorhabditis elegans, GI133901900, Length=556, Percent_Identity=27.8776978417266, Blast_Score=146, Evalue=3e-35, Organism=Caenorhabditis elegans, GI133901902, Length=519, Percent_Identity=27.3603082851638, Blast_Score=124, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6322634, Length=560, Percent_Identity=25.3571428571429, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI45550492, Length=561, Percent_Identity=26.0249554367201, Blast_Score=105, Evalue=8e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003692 [H]
Pfam domain/function: PF02538 Hydantoinase_B [H]
EC number: 3.5.2.14
Molecular weight: Translated: 71054; Mature: 71054
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDAVRTAVMNNRFNAIVEEASAAIYRTAHTTFVKIVQDYQCAIATAEGEMFAYPMLSGVN CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEHHHCCCE VFVGSPLKPTLDAIGRENLKPGDIIITNDPFATDGLVTHLMDVTLLYPIFFDEKLIAIGW EEECCCCCHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHEE AFVHASDIGGAVPGSISPAFTEVFQEGLRVRPMKLYEGGVLNEAIKSIFQDNSRIPTELW HHEEHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCCHHHH GDIQAMISGLKSMDRRVSELCERYDRESVEEGMQDVINYAETKARAVIRTIRDGVYTFSD HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLEGIHDGQLAYFSVTMTVKDSEIEVDFTGTDPQLAAAYNLVTGATTHPYIIQCLYAYIL HHCCCCCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH TVDPLTPRNSGILRAIHGHAPRGTVLNAVYPASGGSRAASATRAYDVILGCLNQALPEGL CCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AAAGGGMSGVIVVSAPDPRTGRDRVNVVGTIDGGGGARRGVDGLDGSEVRYSQRSVPVEV HHCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEE IEIETVLVMRALRLVPDSRRAGRFASGAALEIEMENTSNRAVITVRNLNRFVFAPWGFKG EEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEECCCCCC GEIGLLGKAVVNPGRPDERSVGKISVLELGQGDILRITSSTGGAFGEPLERDVAAIAREI CCEEEEEHHHCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHH ENGMLSPERAADVYAVVFDRDSKIDEAATAEHRRERANRKSDDFNFCIVRQRQDQVWSQQ HHCCCCCCHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHH TRRELASRALTYEQRIRSQLVDRVHHRLLAKGERVDAGKLDQVIAEEAGRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MDAVRTAVMNNRFNAIVEEASAAIYRTAHTTFVKIVQDYQCAIATAEGEMFAYPMLSGVN CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEHHHCCCE VFVGSPLKPTLDAIGRENLKPGDIIITNDPFATDGLVTHLMDVTLLYPIFFDEKLIAIGW EEECCCCCHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHEE AFVHASDIGGAVPGSISPAFTEVFQEGLRVRPMKLYEGGVLNEAIKSIFQDNSRIPTELW HHEEHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCCHHHH GDIQAMISGLKSMDRRVSELCERYDRESVEEGMQDVINYAETKARAVIRTIRDGVYTFSD HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLEGIHDGQLAYFSVTMTVKDSEIEVDFTGTDPQLAAAYNLVTGATTHPYIIQCLYAYIL HHCCCCCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH TVDPLTPRNSGILRAIHGHAPRGTVLNAVYPASGGSRAASATRAYDVILGCLNQALPEGL CCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AAAGGGMSGVIVVSAPDPRTGRDRVNVVGTIDGGGGARRGVDGLDGSEVRYSQRSVPVEV HHCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEE IEIETVLVMRALRLVPDSRRAGRFASGAALEIEMENTSNRAVITVRNLNRFVFAPWGFKG EEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEECCCCCC GEIGLLGKAVVNPGRPDERSVGKISVLELGQGDILRITSSTGGAFGEPLERDVAAIAREI CCEEEEEHHHCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHH ENGMLSPERAADVYAVVFDRDSKIDEAATAEHRRERANRKSDDFNFCIVRQRQDQVWSQQ HHCCCCCCHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHH TRRELASRALTYEQRIRSQLVDRVHHRLLAKGERVDAGKLDQVIAEEAGRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; N-methylimidazolidine-2,4-dione; H2O
Specific reaction: ATP + N-methylimidazolidine-2,4-dione + 2 H2O = ADP + phosphate + N-carbamoylsarcosine
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]