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The map label for this gene is virB9

Identifier: 16119791

GI number: 16119791

Start: 190241

End: 191122

Strand: Direct

Name: virB9

Synonym: Atu6175

Alternate gene names: 16119791

Gene position: 190241-191122 (Clockwise)

Preceding gene: 41223309

Following gene: 16119792

Centisome position: 88.8

GC content: 54.2

Gene sequence:

>882_bases
ATGACGAAAAAAGCATTTCTCACTCTGGCATGTTTACTTTTTGCGGCGATTGGCGCGAGGGCTGAAGACACGCCAACGGC
GGGCAGACTTGATCCGCGCATGCGTTATCTCGCTTACAATCCCGATCAAGTGGTGCGCCTTTCAACGGCGGTTGGAGCCA
CTTTGGTTGTTACTTTCGGGGCTAACGAAACGGTGACAGCTGTTGCCGTTTCCAATAGCAAAGATCTCGCGGCCCTTCCA
CGCGGAAATTATCTTTTCTTCAAGGCTAGCAAGGTTCTCCCACCCCAGCCAGTGGTCGTGCTAACTGCGAGTGACGCCGG
TATGCGACGCTACGTTTTCAGCATCTCTTCCAAGACGCTGCCGCACCTCGATAAAGAGCAGGCCGATCTCTACTATAGCG
TACAATTCGCTTACCCTGCCGATGACGCAGCGGCTCGCCAGAAGGCGGCACAAGAGAAGGCTGTTGCAGACCGTATACGT
GCGGAAGCGCAATATCAACAGAGAGCAGAGGGTTTATTGGAGCAGCCTGCCACGACCGTTGGTGCCGAGGACAAGAATTG
GCACTATGTCGCTCAGGGCGATCGTTCGCTGTTGCCGCTCGAAGTCTTCGATGATGGATTTACGACGGTATTTCACTTCC
CAGGTAATGTACGCATACCCTCCATCTACACGATAAATCCGGATGGAAAGGAAGCTGTCGCTAACTATTCAGTCAAAGGG
AGCTATGTCGAGATTTCTTCGGTTTCCCGTGGTTGGCGTCTGAGGGATGGCCACACGGTATTATGCATTTGGAATACCGC
CTACGATCCCGTCGGCCGCAGGCCGGAGACGGGCACTGTGAGGCCCGATGTGAAGCGCGTCCTAAAGGAGGTGAGAGGAT
GA

Upstream 100 bases:

>100_bases
GCTTGCCCGGCAGATTGAGACTGACCAACCCGGGAGGCTTGGTTGTCACCTCCTACCAGACATCGGAAGATACCGTTTCG
AACGCAGGCCACAGCGAACC

Downstream 100 bases:

>100_bases
ACGACGACAATCAGCAATCGGCGCATGATGTCGATGCGTCGGGGTCCCTGGTCTCCGACACACATCACCGGCGCCTTTCG
GGGGCTCAAAAGTTGATCGT

Product: type IV secretion system protein VirB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTKKAFLTLACLLFAAIGARAEDTPTAGRLDPRMRYLAYNPDQVVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALP
RGNYLFFKASKVLPPQPVVVLTASDAGMRRYVFSISSKTLPHLDKEQADLYYSVQFAYPADDAAARQKAAQEKAVADRIR
AEAQYQQRAEGLLEQPATTVGAEDKNWHYVAQGDRSLLPLEVFDDGFTTVFHFPGNVRIPSIYTINPDGKEAVANYSVKG
SYVEISSVSRGWRLRDGHTVLCIWNTAYDPVGRRPETGTVRPDVKRVLKEVRG

Sequences:

>Translated_293_residues
MTKKAFLTLACLLFAAIGARAEDTPTAGRLDPRMRYLAYNPDQVVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALP
RGNYLFFKASKVLPPQPVVVLTASDAGMRRYVFSISSKTLPHLDKEQADLYYSVQFAYPADDAAARQKAAQEKAVADRIR
AEAQYQQRAEGLLEQPATTVGAEDKNWHYVAQGDRSLLPLEVFDDGFTTVFHFPGNVRIPSIYTINPDGKEAVANYSVKG
SYVEISSVSRGWRLRDGHTVLCIWNTAYDPVGRRPETGTVRPDVKRVLKEVRG
>Mature_292_residues
TKKAFLTLACLLFAAIGARAEDTPTAGRLDPRMRYLAYNPDQVVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALPR
GNYLFFKASKVLPPQPVVVLTASDAGMRRYVFSISSKTLPHLDKEQADLYYSVQFAYPADDAAARQKAAQEKAVADRIRA
EAQYQQRAEGLLEQPATTVGAEDKNWHYVAQGDRSLLPLEVFDDGFTTVFHFPGNVRIPSIYTINPDGKEAVANYSVKGS
YVEISSVSRGWRLRDGHTVLCIWNTAYDPVGRRPETGTVRPDVKRVLKEVRG

Specific function: Is essential for the biogenesis of the T-pilus, which is required for virulence and T-DNA transfer to plant cells. When is associated with virB7, might function as a nucleation center for recruitment of virB proteins during assembly of the T-DNA transfer

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIRB9_AGRT5 (P17799)

Other databases:

- EMBL:   X53264
- EMBL:   J03320
- EMBL:   AE007871
- PIR:   AE3249
- PIR:   S12349
- RefSeq:   NP_053389.1
- RefSeq:   NP_396496.1
- ProteinModelPortal:   P17799
- SMR:   P17799
- IntAct:   P17799
- STRING:   P17799
- GeneID:   1137498
- GeneID:   1224143
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6175
- eggNOG:   COG3504
- HOGENOM:   HBG751000
- OMA:   RMRYLAY
- ProtClustDB:   PRK13861
- BioCyc:   ATUM176299-1:ATU6175-MONOMER
- GO:   GO:0009405
- InterPro:   IPR010258
- InterPro:   IPR014148
- TIGRFAMs:   TIGR02781

Pfam domain/function: PF03524 CagX

EC number: NA

Molecular weight: Translated: 32201; Mature: 32070

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKAFLTLACLLFAAIGARAEDTPTAGRLDPRMRYLAYNPDQVVRLSTAVGATLVVTFG
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEEEC
ANETVTAVAVSNSKDLAALPRGNYLFFKASKVLPPQPVVVLTASDAGMRRYVFSISSKTL
CCCEEEEEEECCCCCEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCC
PHLDKEQADLYYSVQFAYPADDAAARQKAAQEKAVADRIRAEAQYQQRAEGLLEQPATTV
CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC
GAEDKNWHYVAQGDRSLLPLEVFDDGFTTVFHFPGNVRIPSIYTINPDGKEAVANYSVKG
CCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCEECCEEEEECCCCHHHHHCEEECC
SYVEISSVSRGWRLRDGHTVLCIWNTAYDPVGRRPETGTVRPDVKRVLKEVRG
CEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TKKAFLTLACLLFAAIGARAEDTPTAGRLDPRMRYLAYNPDQVVRLSTAVGATLVVTFG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEEEC
ANETVTAVAVSNSKDLAALPRGNYLFFKASKVLPPQPVVVLTASDAGMRRYVFSISSKTL
CCCEEEEEEECCCCCEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCC
PHLDKEQADLYYSVQFAYPADDAAARQKAAQEKAVADRIRAEAQYQQRAEGLLEQPATTV
CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC
GAEDKNWHYVAQGDRSLLPLEVFDDGFTTVFHFPGNVRIPSIYTINPDGKEAVANYSVKG
CCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCEECCEEEEECCCCHHHHHCEEECC
SYVEISSVSRGWRLRDGHTVLCIWNTAYDPVGRRPETGTVRPDVKRVLKEVRG
CEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2370849; 2194232; 2233252; 11743193; 11743194