Click here to switch to the map view.

The map label for this gene is virB5

Identifier: 16119787

GI number: 16119787

Start: 187691

End: 188353

Strand: Direct

Name: virB5

Synonym: Atu6171

Alternate gene names: 16119787

Gene position: 187691-188353 (Clockwise)

Preceding gene: 16119786

Following gene: 41223308

Centisome position: 87.61

GC content: 56.86

Gene sequence:

>663_bases
ATGAAGATCATGCAACTTGTTGCTGCGGCCATGGCCGTCAGCCTTCTTTCGGTCGGGCCCGCGCGGGCGCAGTTCGTTGT
CAGCGATCCGGCGACGGAAGCTGAGACGCTGGCGACGGCGCTCGAGACTGCGGCAAATCTCGAACAGACCATAACGATGG
TGGCGATGTTAACCTCGGCTTATGGCGTCACCGGCCTACTAACTTCGCTCAACCAAAAAAATCAGTATCCCTCGACCAGG
GACTTGGACACGGAAATGTTTTCGCCGCGAATGCCAATGTCGACCACGGCACGTGCGATCACCACCGATACAGATCGCGC
CGTAGTTGGTGGCGACGCTGAAGCGGATCTGTTGCGATCGCAGATCACCGGTTCCGCAAATAGCGCGGGCATTGCGGCTG
ACAACCTGGAGACGATGGACAAACGCTTAACAGCGAATGCCGAGACCTCGACACAGCTTTCTCGCTCTCGCAATATCATG
CAGGCAACCGTTACCAACGGTTTGCTTCTCAAGCAGATCCATGACGCAATGATTCAAAATGTACAGGCGACCAGCTTGTT
AACGATGACCACCGCGCAGGCTGGCCTTCATGAGGCGGAAGAGGCGGCCGCTCAACGTAAGGAGCATCAAAAGACTGCGG
TCATCTTTGGGGCCGTCCCCTGA

Upstream 100 bases:

>100_bases
GATCAGCTTCGCAAAGTACAGGGGGACAACCCATCAGCCTGGCTCAGCGAATTTATGGCTCGTTACCACGAGGCAAAAGA
TTGATCAAAGGTGGGGAACT

Downstream 100 bases:

>100_bases
GACTGGGCGACTTATTCGTGCCGCCCATCTGCACATTTCAGGATGCGAGTTCATTGTATCCGACATTCTGCGACAAGCCA
GTCAAGGTCAGGTCCAAACG

Product: type IV secretion system protein VirB5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKIMQLVAAAMAVSLLSVGPARAQFVVSDPATEAETLATALETAANLEQTITMVAMLTSAYGVTGLLTSLNQKNQYPSTR
DLDTEMFSPRMPMSTTARAITTDTDRAVVGGDAEADLLRSQITGSANSAGIAADNLETMDKRLTANAETSTQLSRSRNIM
QATVTNGLLLKQIHDAMIQNVQATSLLTMTTAQAGLHEAEEAAAQRKEHQKTAVIFGAVP

Sequences:

>Translated_220_residues
MKIMQLVAAAMAVSLLSVGPARAQFVVSDPATEAETLATALETAANLEQTITMVAMLTSAYGVTGLLTSLNQKNQYPSTR
DLDTEMFSPRMPMSTTARAITTDTDRAVVGGDAEADLLRSQITGSANSAGIAADNLETMDKRLTANAETSTQLSRSRNIM
QATVTNGLLLKQIHDAMIQNVQATSLLTMTTAQAGLHEAEEAAAQRKEHQKTAVIFGAVP
>Mature_220_residues
MKIMQLVAAAMAVSLLSVGPARAQFVVSDPATEAETLATALETAANLEQTITMVAMLTSAYGVTGLLTSLNQKNQYPSTR
DLDTEMFSPRMPMSTTARAITTDTDRAVVGGDAEADLLRSQITGSANSAGIAADNLETMDKRLTANAETSTQLSRSRNIM
QATVTNGLLLKQIHDAMIQNVQATSLLTMTTAQAGLHEAEEAAAQRKEHQKTAVIFGAVP

Specific function: VirB proteins are suggested to act at the bacterial surface and there play an important role in directing T-DNA transfer to plant cells

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb5 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIRB5_AGRT5 (P17795)

Other databases:

- EMBL:   X53264
- EMBL:   J03320
- EMBL:   AE007871
- PIR:   AI3248
- PIR:   S12345
- RefSeq:   NP_053385.1
- RefSeq:   NP_396492.1
- STRING:   P17795
- GeneID:   1137494
- GeneID:   1224139
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6171
- eggNOG:   NOG148156
- HOGENOM:   HBG301724
- OMA:   RNIMQAT
- ProtClustDB:   PRK13860
- BioCyc:   ATUM176299-1:ATU6171-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23270; Mature: 23270

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00778 HIS_ACID_PHOSPHAT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIMQLVAAAMAVSLLSVGPARAQFVVSDPATEAETLATALETAANLEQTITMVAMLTSA
CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGVTGLLTSLNQKNQYPSTRDLDTEMFSPRMPMSTTARAITTDTDRAVVGGDAEADLLRS
HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCHHEEECCCCCEEECCCHHHHHHHH
QITGSANSAGIAADNLETMDKRLTANAETSTQLSRSRNIMQATVTNGLLLKQIHDAMIQN
HHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
VQATSLLTMTTAQAGLHEAEEAAAQRKEHQKTAVIFGAVP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure
MKIMQLVAAAMAVSLLSVGPARAQFVVSDPATEAETLATALETAANLEQTITMVAMLTSA
CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGVTGLLTSLNQKNQYPSTRDLDTEMFSPRMPMSTTARAITTDTDRAVVGGDAEADLLRS
HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCHHEEECCCCCEEECCCHHHHHHHH
QITGSANSAGIAADNLETMDKRLTANAETSTQLSRSRNIMQATVTNGLLLKQIHDAMIQN
HHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
VQATSLLTMTTAQAGLHEAEEAAAQRKEHQKTAVIFGAVP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2370849; 2194232; 2233252; 11743193; 11743194