Click here to switch to the map view.

The map label for this gene is virB6

Identifier: 41223308

GI number: 41223308

Start: 188454

End: 189341

Strand: Direct

Name: virB6

Synonym: Atu6172

Alternate gene names: 41223308

Gene position: 188454-189341 (Clockwise)

Preceding gene: 16119787

Following gene: 159161998

Centisome position: 87.97

GC content: 54.28

Gene sequence:

>888_bases
ATGAATTTCACGATCCCGGCGCCGTTTACGGCCATTCATACGATCTTCGATCTAGCCTTTACGACAAGCCTGGACACAAT
GCTTGGGACGATCCAAGAGGCGGTGAGCGCGCCATTGGTCGCCTGCGTCACTCTTTGGATTATCGTTCAGGGTATTCTGG
TCATGCGTGGCGAAATCGACACGCGCGGCGGTATCACTCGGGTGATCACGGTCACCGTCGTTGTTGCCCTTGTCGTCGGG
CAGGCCAACTACCACGACTATGTGGTTTCAGTCTTTGAAGAGACGATTCCAAACTTTATTCAGCAGTTTAGTGGCAGCGG
CCTGCCTCTGCAGACCATTCCCGCTCAGCTCGATACAATGTTCGCCCTAACCCAGGCTGCATTTCAGAGAATTGCATCTG
AAATCGGCCCGATGAATGACCAGGACATCCTTGCTTTCCAGGGGGCTCAGTGGGTCTTTTACGGCACGCTCTGGTCTGCC
TTCGGAATCTACGACGCCGTCGGAATTCTCACGAAAGTGCTTCTGGCGATCGGCCCTTTGATCCTCACGGGATATATCTT
TGATCGCACGCGCGACATCGCGGCAAAGTGGATCGGGCAACTTATCACCTATGGTCTCCTACTTCTCCTGCTAAACCTCG
TGGCGACAATAGTCATCCTAACCGAAGCGACTGCACTCACGCTTATGCTTGGTGTAATCACCCTTGCCGGTACGACCGCG
GCCAAGATCATTGGTCTTTACGAACTCGACATGTTCTTTCTGACTGGTGACGCACTCATTGTCGCTTTGCCGGCAATCGC
CGGCAACATCGGAGGCAGTTATTGGAGCGGCGCGACCCAATCTGCCAACAGCTTGTACCGTCGCTTCGCTCAGGTCGATC
GTCGTTAG

Upstream 100 bases:

>100_bases
GACTGGGCGACTTATTCGTGCCGCCCATCTGCACATTTCAGGATGCGAGTTCATTGTATCCGACATTCTGCGACAAGCCA
GTCAAGGTCAGGTCCAAACG

Downstream 100 bases:

>100_bases
GTCCCGCAAAAAAATTCACGTCGGTGGAGAACTCTATGAAATATTGCCTGCTGTGCCTGGCTCTCGCTTTAGGCGGCTGC
CAGACAAACGATAAATTGGC

Product: type IV secretion system protein VirB6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNFTIPAPFTAIHTIFDLAFTTSLDTMLGTIQEAVSAPLVACVTLWIIVQGILVMRGEIDTRGGITRVITVTVVVALVVG
QANYHDYVVSVFEETIPNFIQQFSGSGLPLQTIPAQLDTMFALTQAAFQRIASEIGPMNDQDILAFQGAQWVFYGTLWSA
FGIYDAVGILTKVLLAIGPLILTGYIFDRTRDIAAKWIGQLITYGLLLLLLNLVATIVILTEATALTLMLGVITLAGTTA
AKIIGLYELDMFFLTGDALIVALPAIAGNIGGSYWSGATQSANSLYRRFAQVDRR

Sequences:

>Translated_295_residues
MNFTIPAPFTAIHTIFDLAFTTSLDTMLGTIQEAVSAPLVACVTLWIIVQGILVMRGEIDTRGGITRVITVTVVVALVVG
QANYHDYVVSVFEETIPNFIQQFSGSGLPLQTIPAQLDTMFALTQAAFQRIASEIGPMNDQDILAFQGAQWVFYGTLWSA
FGIYDAVGILTKVLLAIGPLILTGYIFDRTRDIAAKWIGQLITYGLLLLLLNLVATIVILTEATALTLMLGVITLAGTTA
AKIIGLYELDMFFLTGDALIVALPAIAGNIGGSYWSGATQSANSLYRRFAQVDRR
>Mature_295_residues
MNFTIPAPFTAIHTIFDLAFTTSLDTMLGTIQEAVSAPLVACVTLWIIVQGILVMRGEIDTRGGITRVITVTVVVALVVG
QANYHDYVVSVFEETIPNFIQQFSGSGLPLQTIPAQLDTMFALTQAAFQRIASEIGPMNDQDILAFQGAQWVFYGTLWSA
FGIYDAVGILTKVLLAIGPLILTGYIFDRTRDIAAKWIGQLITYGLLLLLLNLVATIVILTEATALTLMLGVITLAGTTA
AKIIGLYELDMFFLTGDALIVALPAIAGNIGGSYWSGATQSANSLYRRFAQVDRR

Specific function: VirB proteins are suggested to act at the bacterial surface and there play an important role in directing T-DNA transfer to plant cells

COG id: COG3704

COG function: function code U; Type IV secretory pathway, VirB6 components

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbL/virB6 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIRB6_AGRT5 (P17796)

Other databases:

- EMBL:   X53264
- EMBL:   J03320
- EMBL:   AE007871
- PIR:   AB3249
- PIR:   S12346
- RefSeq:   NP_396493.2
- STRING:   P17796
- GeneID:   1137495
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6172
- eggNOG:   COG3704
- HOGENOM:   HBG301723
- OMA:   IGLYELD
- ProtClustDB:   PRK13852
- BioCyc:   ATUM176299-1:ATU6172-MONOMER
- InterPro:   IPR007688

Pfam domain/function: PF04610 TrbL

EC number: NA

Molecular weight: Translated: 31861; Mature: 31861

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xae1f744)-; HASH(0xbabab30)-; HASH(0xb7b8d98)-; HASH(0xbbd3d98)-; HASH(0xc3f4830)-; HASH(0xbf9adc0)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFTIPAPFTAIHTIFDLAFTTSLDTMLGTIQEAVSAPLVACVTLWIIVQGILVMRGEID
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TRGGITRVITVTVVVALVVGQANYHDYVVSVFEETIPNFIQQFSGSGLPLQTIPAQLDTM
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
FALTQAAFQRIASEIGPMNDQDILAFQGAQWVFYGTLWSAFGIYDAVGILTKVLLAIGPL
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTGYIFDRTRDIAAKWIGQLITYGLLLLLLNLVATIVILTEATALTLMLGVITLAGTTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
AKIIGLYELDMFFLTGDALIVALPAIAGNIGGSYWSGATQSANSLYRRFAQVDRR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MNFTIPAPFTAIHTIFDLAFTTSLDTMLGTIQEAVSAPLVACVTLWIIVQGILVMRGEID
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TRGGITRVITVTVVVALVVGQANYHDYVVSVFEETIPNFIQQFSGSGLPLQTIPAQLDTM
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
FALTQAAFQRIASEIGPMNDQDILAFQGAQWVFYGTLWSAFGIYDAVGILTKVLLAIGPL
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTGYIFDRTRDIAAKWIGQLITYGLLLLLLNLVATIVILTEATALTLMLGVITLAGTTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
AKIIGLYELDMFFLTGDALIVALPAIAGNIGGSYWSGATQSANSLYRRFAQVDRR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2370849; 2194232; 2233252; 11743193; 11743194