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The map label for this gene is ycaJ [C]

Identifier: 160902770

GI number: 160902770

Start: 1415042

End: 1416277

Strand: Direct

Name: ycaJ [C]

Synonym: Pmob_1323

Alternate gene names: 160902770

Gene position: 1415042-1416277 (Clockwise)

Preceding gene: 160902769

Following gene: 160902771

Centisome position: 65.22

GC content: 34.71

Gene sequence:

>1236_bases
TTGAGTGGTACACAACCTCTTTATGAGATAATTAGACCGAAAAAGGTTGATGAGGTATTGGGTAACGAAAAGTTGAAAGA
AATTCTTAAAACCTGGATAAAAAATAAAAAGGTTAGATCTTTCATTATATATGGGGAACCTGGAAGTGGTAAGTCTACGA
TTGTAAGGGCTTTAATAAACGAAATAAAAGATTATTACGATGTTTTTTCTATTTCAGGGGCAATAGAAGGAAAGAAAAAA
ATAAAGGATATAATAGAGCAAAAAAATAATCTTTTTACAAAACCCAAATTATTATTTGTCGACGAAATACATCGATTGAA
TAAAGCCGAGCAAGATACCTTACTTTTAAGTGTTGAAACGGGAGAATTAACTCTCATAGGGGCGACAACAGAAAATCCAG
CTATTAGTGTCAACCCTGCTTTGTTATCAAGAGTATTGGTTTTTAAAACTAAAGAACTGATTACTGACGATTATGAAAAA
TTATTCCAACAAATAGAAGATTACTACAAAGATTTAAAAATTACAAAAGAAGCACGCAAAGCACTCATAGAATATGCTGG
AAATGACATCCGAAGGATAATGAATCTAATAGAGACTGCAAATGAAGCTGGGATAAATTCAATTGATTTGGAATTTCTGA
AAGATTTTACCGGATATCGGCTAACTTACGATAAAAACGCAAAATACAGCTTCATTTCTGCATATATAAAAAGTATGAGG
GGTAGCGATGTGGATGCGGCTTTGTTATACCTTGCTTATATGCTTGAAAGCGGTGAGGACCCGATGTATATAGCAAGAAG
GATGGTTATTTTATCTGCCGAGGATGTTGGTTTGGCTGATCCTAACGCCTTAAATATAGCTGTATCAGCTATGATAGCTA
CTGAACATGTTGGTTACCCCGAATGTTACCTTCCGTTATCTGAAGCTACAATGTATCTGTGTTCATCGCCAAAATCCAAT
TCAGCATACCTAGCCTACGCTAAAGCCAAAGAGTTTATAAGCCAAAATAATTTCGAGATTCCCCCTAAATTGATAAATCC
TTTGAATAAAAGAATGGAAAAACAAGGCTTTGGAGAAGGGTACAAGTATCCTCACGATTACGGAGGTTTCGTTAGAGAAA
GTTACATGCCAGAAGGTTTTGAAAGTACCCAATTTTTCACGCCAAAGGAAATCGGTATTGAAAAACGCATAAAAGAACGA
TTAAAAGATCTCTGGAAAGATAAGAAGAATTATTGA

Upstream 100 bases:

>100_bases
GATGGGGATGTGAAGATAAGCTTACTTTCGAATGCGAAGGCAAAAAGTATTTTAGGATGGGAGCCTAATTACGATTTAGA
AAAAGGGGTGGAAAACACTA

Downstream 100 bases:

>100_bases
ACAACGAGTCATGAAACTTTTTGCACAAAAATTTAGATAAGTTAGCATTATTGAAATTTTTTTCATTATTCGGGAATAAT
CTGCAATAAATCCTGTAGAC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSGTQPLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKVRSFIIYGEPGSGKSTIVRALINEIKDYYDVFSISGAIEGKKK
IKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVETGELTLIGATTENPAISVNPALLSRVLVFKTKELITDDYEK
LFQQIEDYYKDLKITKEARKALIEYAGNDIRRIMNLIETANEAGINSIDLEFLKDFTGYRLTYDKNAKYSFISAYIKSMR
GSDVDAALLYLAYMLESGEDPMYIARRMVILSAEDVGLADPNALNIAVSAMIATEHVGYPECYLPLSEATMYLCSSPKSN
SAYLAYAKAKEFISQNNFEIPPKLINPLNKRMEKQGFGEGYKYPHDYGGFVRESYMPEGFESTQFFTPKEIGIEKRIKER
LKDLWKDKKNY

Sequences:

>Translated_411_residues
MSGTQPLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKVRSFIIYGEPGSGKSTIVRALINEIKDYYDVFSISGAIEGKKK
IKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVETGELTLIGATTENPAISVNPALLSRVLVFKTKELITDDYEK
LFQQIEDYYKDLKITKEARKALIEYAGNDIRRIMNLIETANEAGINSIDLEFLKDFTGYRLTYDKNAKYSFISAYIKSMR
GSDVDAALLYLAYMLESGEDPMYIARRMVILSAEDVGLADPNALNIAVSAMIATEHVGYPECYLPLSEATMYLCSSPKSN
SAYLAYAKAKEFISQNNFEIPPKLINPLNKRMEKQGFGEGYKYPHDYGGFVRESYMPEGFESTQFFTPKEIGIEKRIKER
LKDLWKDKKNY
>Mature_410_residues
SGTQPLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKVRSFIIYGEPGSGKSTIVRALINEIKDYYDVFSISGAIEGKKKI
KDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVETGELTLIGATTENPAISVNPALLSRVLVFKTKELITDDYEKL
FQQIEDYYKDLKITKEARKALIEYAGNDIRRIMNLIETANEAGINSIDLEFLKDFTGYRLTYDKNAKYSFISAYIKSMRG
SDVDAALLYLAYMLESGEDPMYIARRMVILSAEDVGLADPNALNIAVSAMIATEHVGYPECYLPLSEATMYLCSSPKSNS
AYLAYAKAKEFISQNNFEIPPKLINPLNKRMEKQGFGEGYKYPHDYGGFVRESYMPEGFESTQFFTPKEIGIEKRIKERL
KDLWKDKKNY

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=32.7981651376147, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI18426904, Length=436, Percent_Identity=29.1284403669725, Blast_Score=177, Evalue=1e-44,
Organism=Escherichia coli, GI1787119, Length=429, Percent_Identity=34.7319347319347, Blast_Score=243, Evalue=1e-65,
Organism=Saccharomyces cerevisiae, GI6324111, Length=420, Percent_Identity=33.0952380952381, Blast_Score=218, Evalue=1e-57,
Organism=Saccharomyces cerevisiae, GI6324039, Length=204, Percent_Identity=28.921568627451, Blast_Score=80, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46960; Mature: 46828

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTQPLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKVRSFIIYGEPGSGKSTIVRALIN
CCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH
EIKDYYDVFSISGAIEGKKKIKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVET
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEC
GELTLIGATTENPAISVNPALLSRVLVFKTKELITDDYEKLFQQIEDYYKDLKITKEARK
CCEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALIEYAGNDIRRIMNLIETANEAGINSIDLEFLKDFTGYRLTYDKNAKYSFISAYIKSMR
HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHC
GSDVDAALLYLAYMLESGEDPMYIARRMVILSAEDVGLADPNALNIAVSAMIATEHVGYP
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC
ECYLPLSEATMYLCSSPKSNSAYLAYAKAKEFISQNNFEIPPKLINPLNKRMEKQGFGEG
HHCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
YKYPHDYGGFVRESYMPEGFESTQFFTPKEIGIEKRIKERLKDLWKDKKNY
CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SGTQPLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKVRSFIIYGEPGSGKSTIVRALIN
CCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH
EIKDYYDVFSISGAIEGKKKIKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVET
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEC
GELTLIGATTENPAISVNPALLSRVLVFKTKELITDDYEKLFQQIEDYYKDLKITKEARK
CCEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALIEYAGNDIRRIMNLIETANEAGINSIDLEFLKDFTGYRLTYDKNAKYSFISAYIKSMR
HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHC
GSDVDAALLYLAYMLESGEDPMYIARRMVILSAEDVGLADPNALNIAVSAMIATEHVGYP
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC
ECYLPLSEATMYLCSSPKSNSAYLAYAKAKEFISQNNFEIPPKLINPLNKRMEKQGFGEG
HHCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
YKYPHDYGGFVRESYMPEGFESTQFFTPKEIGIEKRIKERLKDLWKDKKNY
CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]