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The map label for this gene is rbsR [H]

Identifier: 160901975

GI number: 160901975

Start: 543115

End: 544107

Strand: Direct

Name: rbsR [H]

Synonym: Pmob_0499

Alternate gene names: 160901975

Gene position: 543115-544107 (Clockwise)

Preceding gene: 160901974

Following gene: 160901976

Centisome position: 25.03

GC content: 34.74

Gene sequence:

>993_bases
ATGGCAACGATAAGAGAAATCGCTAAAGCTTCGGGCTTCTCTATTGCAACGGTGTCTCGAGTTCTCAGTGGAAGCGAGAA
CGTTACTGAAGAAACAAGAAAAAAGATTTTTAAAGTTATAAAAGAATTAGATTACAGAAGAAGCCAGAGTATAAAAGGGA
GCTCCTTCAGAGGGATTGGGGTCTTAGTCCCAGATCTAAAAGAAGATTTCTACGGAATGGTAGCGGAAGGAATAGAAGAA
GTCCTTCTAAAAAATCATTTCGAAATGTTCCTTTCAACATATAGACATTCTTTAGAAAAAGAGAGAGATGCCTTAGAAGA
GTTCTTCGCAAGAAAAGTTGATGGTGTCATTGTTTGTACAACCTACCAAGATGAAGAATGTTTAGAAAAATTTATTGAAG
CAGGTATACCCGTTGTTGCTGTTGATAGAGAAAACACGGAACTGAAAATGGATATTGTTACTATAGATAATTATGCCTCT
TCGTTGAAAATTGCAAAATATTTGTACGATATGGGTCACAGAAAAGTCTTACATGTCGAAGGTCTAATAGAAGTATACTC
TGCCAGGGAAAGAAAGCAGGCTTTTATGGATTTTGCACAAAAGAAAGAGGATTTTAATGTTACCTTTATTCCCGCGACTT
TTGATGTAAAAGATGGATATATTGCTATTAAAAAATATCTTGACAAATATGGTAAAAACTTTACAGCGATTTTTTTTGCT
AATGATTGGATGGCCTTGGGTGGGATAAAAGCACTGAAAGAAGCTGGATTGAATTACCCTGAAGATATATCAATAGTTGG
TTTTGATGATTCCCCTTTGGCTAAATATTTATACCCTTCTCTAACAACCATTAAGCAACCTGTTTACGAAATGGGATTGA
ACGCAGCAAAGTTATTGATCGAAAAATTAGAAGGTAAAAATGAAAGTAAGGTGAAAAGAAGGGTTATCTTGCCAACAAAA
TTAATAATTAGAGATTCAGTCAGAAAAATATAA

Upstream 100 bases:

>100_bases
GAATCGCTTTTTTCAAAGACCCTGATAACATTCTAATAGAGATAATTGAGGGAGAACTTAATTTAGAAACATATTAAGTG
TAACCTTTGAGGTGAGAAAA

Downstream 100 bases:

>100_bases
TTTAATGATTTTTTGATATAATTATCAATAAAGAGGTGATTATTATAAAAATATACATTTCATTTGATTTTGAAGGGCTT
GGGGGTGTCGCCCAATGGAA

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MATIREIAKASGFSIATVSRVLSGSENVTEETRKKIFKVIKELDYRRSQSIKGSSFRGIGVLVPDLKEDFYGMVAEGIEE
VLLKNHFEMFLSTYRHSLEKERDALEEFFARKVDGVIVCTTYQDEECLEKFIEAGIPVVAVDRENTELKMDIVTIDNYAS
SLKIAKYLYDMGHRKVLHVEGLIEVYSARERKQAFMDFAQKKEDFNVTFIPATFDVKDGYIAIKKYLDKYGKNFTAIFFA
NDWMALGGIKALKEAGLNYPEDISIVGFDDSPLAKYLYPSLTTIKQPVYEMGLNAAKLLIEKLEGKNESKVKRRVILPTK
LIIRDSVRKI

Sequences:

>Translated_330_residues
MATIREIAKASGFSIATVSRVLSGSENVTEETRKKIFKVIKELDYRRSQSIKGSSFRGIGVLVPDLKEDFYGMVAEGIEE
VLLKNHFEMFLSTYRHSLEKERDALEEFFARKVDGVIVCTTYQDEECLEKFIEAGIPVVAVDRENTELKMDIVTIDNYAS
SLKIAKYLYDMGHRKVLHVEGLIEVYSARERKQAFMDFAQKKEDFNVTFIPATFDVKDGYIAIKKYLDKYGKNFTAIFFA
NDWMALGGIKALKEAGLNYPEDISIVGFDDSPLAKYLYPSLTTIKQPVYEMGLNAAKLLIEKLEGKNESKVKRRVILPTK
LIIRDSVRKI
>Mature_329_residues
ATIREIAKASGFSIATVSRVLSGSENVTEETRKKIFKVIKELDYRRSQSIKGSSFRGIGVLVPDLKEDFYGMVAEGIEEV
LLKNHFEMFLSTYRHSLEKERDALEEFFARKVDGVIVCTTYQDEECLEKFIEAGIPVVAVDRENTELKMDIVTIDNYASS
LKIAKYLYDMGHRKVLHVEGLIEVYSARERKQAFMDFAQKKEDFNVTFIPATFDVKDGYIAIKKYLDKYGKNFTAIFFAN
DWMALGGIKALKEAGLNYPEDISIVGFDDSPLAKYLYPSLTTIKQPVYEMGLNAAKLLIEKLEGKNESKVKRRVILPTKL
IIRDSVRKI

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788474, Length=340, Percent_Identity=31.1764705882353, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1790369, Length=337, Percent_Identity=28.486646884273, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1787948, Length=337, Percent_Identity=30.2670623145401, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1790194, Length=312, Percent_Identity=28.8461538461538, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789068, Length=340, Percent_Identity=28.8235294117647, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1789202, Length=298, Percent_Identity=25.8389261744966, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786540, Length=329, Percent_Identity=26.1398176291793, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI48994940, Length=311, Percent_Identity=25.4019292604502, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1790715, Length=313, Percent_Identity=22.3642172523962, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1789456, Length=353, Percent_Identity=27.1954674220963, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787906, Length=338, Percent_Identity=24.2603550295858, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790689, Length=325, Percent_Identity=24.3076923076923, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787580, Length=325, Percent_Identity=24.3076923076923, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1786268, Length=292, Percent_Identity=23.972602739726, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790192, Length=247, Percent_Identity=25.1012145748988, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37629; Mature: 37498

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIREIAKASGFSIATVSRVLSGSENVTEETRKKIFKVIKELDYRRSQSIKGSSFRGIG
CCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
VLVPDLKEDFYGMVAEGIEEVLLKNHFEMFLSTYRHSLEKERDALEEFFARKVDGVIVCT
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TYQDEECLEKFIEAGIPVVAVDRENTELKMDIVTIDNYASSLKIAKYLYDMGHRKVLHVE
ECCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEHHH
GLIEVYSARERKQAFMDFAQKKEDFNVTFIPATFDVKDGYIAIKKYLDKYGKNFTAIFFA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEE
NDWMALGGIKALKEAGLNYPEDISIVGFDDSPLAKYLYPSLTTIKQPVYEMGLNAAKLLI
CCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHH
EKLEGKNESKVKRRVILPTKLIIRDSVRKI
HHHCCCCHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ATIREIAKASGFSIATVSRVLSGSENVTEETRKKIFKVIKELDYRRSQSIKGSSFRGIG
CCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
VLVPDLKEDFYGMVAEGIEEVLLKNHFEMFLSTYRHSLEKERDALEEFFARKVDGVIVCT
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TYQDEECLEKFIEAGIPVVAVDRENTELKMDIVTIDNYASSLKIAKYLYDMGHRKVLHVE
ECCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEHHH
GLIEVYSARERKQAFMDFAQKKEDFNVTFIPATFDVKDGYIAIKKYLDKYGKNFTAIFFA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEE
NDWMALGGIKALKEAGLNYPEDISIVGFDDSPLAKYLYPSLTTIKQPVYEMGLNAAKLLI
CCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHH
EKLEGKNESKVKRRVILPTKLIIRDSVRKI
HHHCCCCHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]