| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
Click here to switch to the map view.
The map label for this gene is opuE [H]
Identifier: 160877524
GI number: 160877524
Start: 5226462
End: 5227958
Strand: Direct
Name: opuE [H]
Synonym: Sbal195_4423
Alternate gene names: 160877524
Gene position: 5226462-5227958 (Clockwise)
Preceding gene: 160877523
Following gene: 160877525
Centisome position: 97.74
GC content: 47.09
Gene sequence:
>1497_bases ATGAATTACCTCGCTTACATTTCCTTAGCTATCTACTTTATCGTTATGCTCGCCATTGGCTTATTCGCTTACAAAAAATC CACCAGCGATGTGTCAGGCTATATTCTTGGCGGCCGTAAGGTAAGTCCACAGGTCACCGCACTCTCAGCGGGTGCATCTG ACATGAGTGGCTGGATGCTAATGGGTCTTCCCGGTGCTATGTTTTTGGTTGGTTTCGAAACCATTTACATCGCACTTGGG CTATTGATTGGTGCTCTAATCAATTACTTGGTCGTCGCACCAAAACTTAGGGTTTATACCGAGGTGGCGGACAACGCCCT CACTATCCCGGAGTTTTTTGCTAAACGCTTCGGCAATGCCAACGGCAGTATCCGTATTATTTCGGCCGTGATCATTGTGA TCTTCTTTACCTTGTATACCTCAGCAGGTTTAGTGGCTGGCGGTAAATTGTTTGAGTCAGCATTTGGCCTGAACTACGAC ATAGGTTTAGTCGTCACACTAGCGGTTGTGGTTTCTTATACCCTGTTAGGTGGATTCTTGGCAGTGAGCCTCACTGACTT TGTCCAAGGCTGTATTATGTTTGTCGCCTTAGTCTTAGTTCCTGTCGTGGCATATCAAGAATTTACCAGCGCTGACACTA TGTTGAACTTTGCGTATCAGTCGATTCCACACTTCACCGATGCGATGCAAAACGTCACTATGTTAGGGCTTATCTCAAGC TTATCTTGGGGACTCGGTTACTTTGGCCAACCGCATATTATTGTGCGTTTTATGGCGATTCGTTCAGTAGCTGACATTAA AACCGCCAGACACATAGGTATGGGCTGGATGACAGTGACCATTGTGGGTGCACTGGCAACAGGTCTTGTCGGTATTGCTT ACGCCAATAAATTTGGTATGAAGCTGACCGATCCTGAAACCATCTTTATCGTATTTTCTGAGTTGTTGTTCCATCCGATC ATTAGTGGCTTCTTACTGGCCGCCATTCTGGCCGCGATCATGAGCACCATTTCATCGCAGCTATTAGTGTCATCAAGCTC GCTAACGGAAGATATCTATCGCGTGATTTCTAAGAAAGAATCTACCGAGAAAGACATGGTGAAAATGGGACGCTTTGGCG TAGCAGGCGTAGCAATTGTCGCGAGTCTACTGGCGCTCGACCGTTCTAGCAGTGTGCTATCACTGGTGAGTAATGCATGG GCAGGATTCGGTGCCGCCTTCGGTCCGTTAGTTTTGTTTAGCTTGTACAAAGCAAACCTAACCCACAAAGCCGCGATTGC CGGCATAGTGTCAGGCGCTGCTACAGTGTTGTTTTGGATTTATGCCCCGGTATTGGCAGATGGACAAGCCTTAACCACAG TGGTGTATGAAATGATCCCCGGCTTTGCCGTGAGCAGTGTGGTGATTTGGATAGTCTCGTTACTCGATACTGATCCCTGT GCCAAAACCACTAAATTATTCCATAAGGCTGGCCGTGTTTTAGCCGAAGACAGATGA
Upstream 100 bases:
>100_bases GCAGTTTATGTGTTTACTTGCAATATTAAGCACCTATCTCTTTGTCATTTTGAAACCGAGTATTATTCAAAATAACAAAG CGTTAGGAGAAAAATAACCA
Downstream 100 bases:
>100_bases GGCGCGCAGGTATGACTGACTTACCCTGGAAACGCATTGTCGTTAAGGTAGGTAGTGCCCTGATTGCACCCCACAAACAA GGTTGCAGCAGTCACTACTT
Product: sodium/proline symporter
Products: NA
Alternate protein names: Sodium/proline symporter [H]
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MNYLAYISLAIYFIVMLAIGLFAYKKSTSDVSGYILGGRKVSPQVTALSAGASDMSGWMLMGLPGAMFLVGFETIYIALG LLIGALINYLVVAPKLRVYTEVADNALTIPEFFAKRFGNANGSIRIISAVIIVIFFTLYTSAGLVAGGKLFESAFGLNYD IGLVVTLAVVVSYTLLGGFLAVSLTDFVQGCIMFVALVLVPVVAYQEFTSADTMLNFAYQSIPHFTDAMQNVTMLGLISS LSWGLGYFGQPHIIVRFMAIRSVADIKTARHIGMGWMTVTIVGALATGLVGIAYANKFGMKLTDPETIFIVFSELLFHPI ISGFLLAAILAAIMSTISSQLLVSSSSLTEDIYRVISKKESTEKDMVKMGRFGVAGVAIVASLLALDRSSSVLSLVSNAW AGFGAAFGPLVLFSLYKANLTHKAAIAGIVSGAATVLFWIYAPVLADGQALTTVVYEMIPGFAVSSVVIWIVSLLDTDPC AKTTKLFHKAGRVLAEDR
Sequences:
>Translated_498_residues MNYLAYISLAIYFIVMLAIGLFAYKKSTSDVSGYILGGRKVSPQVTALSAGASDMSGWMLMGLPGAMFLVGFETIYIALG LLIGALINYLVVAPKLRVYTEVADNALTIPEFFAKRFGNANGSIRIISAVIIVIFFTLYTSAGLVAGGKLFESAFGLNYD IGLVVTLAVVVSYTLLGGFLAVSLTDFVQGCIMFVALVLVPVVAYQEFTSADTMLNFAYQSIPHFTDAMQNVTMLGLISS LSWGLGYFGQPHIIVRFMAIRSVADIKTARHIGMGWMTVTIVGALATGLVGIAYANKFGMKLTDPETIFIVFSELLFHPI ISGFLLAAILAAIMSTISSQLLVSSSSLTEDIYRVISKKESTEKDMVKMGRFGVAGVAIVASLLALDRSSSVLSLVSNAW AGFGAAFGPLVLFSLYKANLTHKAAIAGIVSGAATVLFWIYAPVLADGQALTTVVYEMIPGFAVSSVVIWIVSLLDTDPC AKTTKLFHKAGRVLAEDR >Mature_498_residues MNYLAYISLAIYFIVMLAIGLFAYKKSTSDVSGYILGGRKVSPQVTALSAGASDMSGWMLMGLPGAMFLVGFETIYIALG LLIGALINYLVVAPKLRVYTEVADNALTIPEFFAKRFGNANGSIRIISAVIIVIFFTLYTSAGLVAGGKLFESAFGLNYD IGLVVTLAVVVSYTLLGGFLAVSLTDFVQGCIMFVALVLVPVVAYQEFTSADTMLNFAYQSIPHFTDAMQNVTMLGLISS LSWGLGYFGQPHIIVRFMAIRSVADIKTARHIGMGWMTVTIVGALATGLVGIAYANKFGMKLTDPETIFIVFSELLFHPI ISGFLLAAILAAIMSTISSQLLVSSSSLTEDIYRVISKKESTEKDMVKMGRFGVAGVAIVASLLALDRSSSVLSLVSNAW AGFGAAFGPLVLFSLYKANLTHKAAIAGIVSGAATVLFWIYAPVLADGQALTTVVYEMIPGFAVSSVVIWIVSLLDTDPC AKTTKLFHKAGRVLAEDR
Specific function: Catalyzes the sodium-dependent uptake of extracellular proline [H]
COG id: COG0591
COG function: function code ER; Na+/proline symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI310128183, Length=498, Percent_Identity=50.4016064257028, Blast_Score=494, Evalue=1e-139, Organism=Homo sapiens, GI14140236, Length=470, Percent_Identity=22.3404255319149, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1787251, Length=488, Percent_Identity=46.7213114754098, Blast_Score=406, Evalue=1e-114, Organism=Escherichia coli, GI1790503, Length=520, Percent_Identity=25.9615384615385, Blast_Score=116, Evalue=3e-27, Organism=Escherichia coli, GI87082237, Length=447, Percent_Identity=25.503355704698, Blast_Score=90, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17539284, Length=426, Percent_Identity=22.3004694835681, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24645928, Length=380, Percent_Identity=24.4736842105263, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24640370, Length=356, Percent_Identity=25, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24651739, Length=465, Percent_Identity=22.5806451612903, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011851 - InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 53183; Mature: 53183
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: PS00456 NA_SOLUT_SYMP_1 ; PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYLAYISLAIYFIVMLAIGLFAYKKSTSDVSGYILGGRKVSPQVTALSAGASDMSGWML CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCEEE MGLPGAMFLVGFETIYIALGLLIGALINYLVVAPKLRVYTEVADNALTIPEFFAKRFGNA ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCC NGSIRIISAVIIVIFFTLYTSAGLVAGGKLFESAFGLNYDIGLVVTLAVVVSYTLLGGFL CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH AVSLTDFVQGCIMFVALVLVPVVAYQEFTSADTMLNFAYQSIPHFTDAMQNVTMLGLISS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LSWGLGYFGQPHIIVRFMAIRSVADIKTARHIGMGWMTVTIVGALATGLVGIAYANKFGM HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC KLTDPETIFIVFSELLFHPIISGFLLAAILAAIMSTISSQLLVSSSSLTEDIYRVISKKE EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC STEKDMVKMGRFGVAGVAIVASLLALDRSSSVLSLVSNAWAGFGAAFGPLVLFSLYKANL CHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC THKAAIAGIVSGAATVLFWIYAPVLADGQALTTVVYEMIPGFAVSSVVIWIVSLLDTDPC HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC AKTTKLFHKAGRVLAEDR HHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNYLAYISLAIYFIVMLAIGLFAYKKSTSDVSGYILGGRKVSPQVTALSAGASDMSGWML CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCEEE MGLPGAMFLVGFETIYIALGLLIGALINYLVVAPKLRVYTEVADNALTIPEFFAKRFGNA ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCC NGSIRIISAVIIVIFFTLYTSAGLVAGGKLFESAFGLNYDIGLVVTLAVVVSYTLLGGFL CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH AVSLTDFVQGCIMFVALVLVPVVAYQEFTSADTMLNFAYQSIPHFTDAMQNVTMLGLISS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LSWGLGYFGQPHIIVRFMAIRSVADIKTARHIGMGWMTVTIVGALATGLVGIAYANKFGM HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC KLTDPETIFIVFSELLFHPIISGFLLAAILAAIMSTISSQLLVSSSSLTEDIYRVISKKE EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC STEKDMVKMGRFGVAGVAIVASLLALDRSSSVLSLVSNAWAGFGAAFGPLVLFSLYKANL CHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC THKAAIAGIVSGAATVLFWIYAPVLADGQALTTVVYEMIPGFAVSSVVIWIVSLLDTDPC HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC AKTTKLFHKAGRVLAEDR HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969499; 9384377 [H]