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The map label for this gene is yidZ [H]

Identifier: 160877346

GI number: 160877346

Start: 5022743

End: 5023684

Strand: Reverse

Name: yidZ [H]

Synonym: Sbal195_4244

Alternate gene names: 160877346

Gene position: 5023684-5022743 (Counterclockwise)

Preceding gene: 160877347

Following gene: 160877343

Centisome position: 93.95

GC content: 51.8

Gene sequence:

>942_bases
ATGCTAAAACGTTTGGATCTGAATTTACTACCCGTACTGGAAATCCTGCTTGAGGAACAAAGTGTGACCGCCGCTGCGGC
GCGGTTGCATTTGAGCCAGTCGGCGGTGAGTAAACAACTGACGCGCTTGAGGGAAGTGTTTGATGATCCTCTGTTTGAGC
GCACCGCCTACGGCCTAAAACCGACGCCTAAAGCCTTGTCGCTCGCGCCGGAGTTGCGCCAATGTTTACAGCAATTAGCG
CAATTTACCCGGCCCGATACCTTTGAGCCCGCCTTAAGTCAGCGGCAGTTTAGAATGCATTTGGTTGAGACCACATACTC
GCTGACTTTTCCGCATTTTATGCCCTCGCTGCTCGCCCAAGCGCCCGGTGTGAGTCTCAATTGCCAAACTTGGCGGCTCG
ATACTATGGACAGATTACTGCGCTGCGACATCGACTTAGCCATAGGTTGCCGCGAGTGGGACGAGCGTTCGCCTATGCAT
GTGAATCATATTCCCGACGACTTGTGCCATGTCGAGTTAGTGCAGGATTATACTGTGTGCTTGATGCGCCGCGATCATCC
GGCGTTAGCACAAGAATGGAATTTAGACACCTTCTTGAGCTATCGCCATCTGCAAGTGGCTTTTGGTGGCATAGAGCATT
GGTTGCTGGATGATGTGCTGCAACTTGAGGGCCGTCAGCGCGATATCGCCGTGAACATGACCGACTTTCAGAGCGCTCTG
GCCCTGTGTGAACAAAGCGATTTAATTCTTTGCGCGCCGTCCCGTTATGCCTTTGCTGTGATGAAATCCTTCGAGCTTCA
GTCTTTGCCATCTCCTATCAAGCTGATCCCTGGCGCGTATTTATTGATGTGGCATAAACACTTCGAGCATGACTTGAGCC
ATAAATGGCTACGTGAGTTGATCATAAGCCAAGTGCTGCCGTCGATTACGCCTCGGGTTTAG

Upstream 100 bases:

>100_bases
TTACTGTCGCTGTTATTGATGAAATTGCCACAGAATTTAAGGTTAAACCCATTTAAAAAAGTGCAGCCCTAGTCAGTATT
TTGGGGTAAATGAGGGATAG

Downstream 100 bases:

>100_bases
GCTCTTTTGACGCCGTTAACCAAGCGGTTAATGTGGGTAAGACTGCTTTTCCATCCGCTAGCCCTTGTTGATAGACGGCG
GTCACTTTATCGATATTGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLKRLDLNLLPVLEILLEEQSVTAAAARLHLSQSAVSKQLTRLREVFDDPLFERTAYGLKPTPKALSLAPELRQCLQQLA
QFTRPDTFEPALSQRQFRMHLVETTYSLTFPHFMPSLLAQAPGVSLNCQTWRLDTMDRLLRCDIDLAIGCREWDERSPMH
VNHIPDDLCHVELVQDYTVCLMRRDHPALAQEWNLDTFLSYRHLQVAFGGIEHWLLDDVLQLEGRQRDIAVNMTDFQSAL
ALCEQSDLILCAPSRYAFAVMKSFELQSLPSPIKLIPGAYLLMWHKHFEHDLSHKWLRELIISQVLPSITPRV

Sequences:

>Translated_313_residues
MLKRLDLNLLPVLEILLEEQSVTAAAARLHLSQSAVSKQLTRLREVFDDPLFERTAYGLKPTPKALSLAPELRQCLQQLA
QFTRPDTFEPALSQRQFRMHLVETTYSLTFPHFMPSLLAQAPGVSLNCQTWRLDTMDRLLRCDIDLAIGCREWDERSPMH
VNHIPDDLCHVELVQDYTVCLMRRDHPALAQEWNLDTFLSYRHLQVAFGGIEHWLLDDVLQLEGRQRDIAVNMTDFQSAL
ALCEQSDLILCAPSRYAFAVMKSFELQSLPSPIKLIPGAYLLMWHKHFEHDLSHKWLRELIISQVLPSITPRV
>Mature_313_residues
MLKRLDLNLLPVLEILLEEQSVTAAAARLHLSQSAVSKQLTRLREVFDDPLFERTAYGLKPTPKALSLAPELRQCLQQLA
QFTRPDTFEPALSQRQFRMHLVETTYSLTFPHFMPSLLAQAPGVSLNCQTWRLDTMDRLLRCDIDLAIGCREWDERSPMH
VNHIPDDLCHVELVQDYTVCLMRRDHPALAQEWNLDTFLSYRHLQVAFGGIEHWLLDDVLQLEGRQRDIAVNMTDFQSAL
ALCEQSDLILCAPSRYAFAVMKSFELQSLPSPIKLIPGAYLLMWHKHFEHDLSHKWLRELIISQVLPSITPRV

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=293, Percent_Identity=31.740614334471, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI87081684, Length=306, Percent_Identity=28.1045751633987, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI87081766, Length=289, Percent_Identity=26.9896193771626, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786820, Length=80, Percent_Identity=43.75, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36116; Mature: 36116

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRLDLNLLPVLEILLEEQSVTAAAARLHLSQSAVSKQLTRLREVFDDPLFERTAYGLK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC
PTPKALSLAPELRQCLQQLAQFTRPDTFEPALSQRQFRMHLVETTYSLTFPHFMPSLLAQ
CCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
APGVSLNCQTWRLDTMDRLLRCDIDLAIGCREWDERSPMHVNHIPDDLCHVELVQDYTVC
CCCCEECCCEEEHHHHHHHHHCCCCEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHHHH
LMRRDHPALAQEWNLDTFLSYRHLQVAFGGIEHWLLDDVLQLEGRQRDIAVNMTDFQSAL
HHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
ALCEQSDLILCAPSRYAFAVMKSFELQSLPSPIKLIPGAYLLMWHKHFEHDLSHKWLREL
HHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IISQVLPSITPRV
HHHHHHHHCCCCC
>Mature Secondary Structure
MLKRLDLNLLPVLEILLEEQSVTAAAARLHLSQSAVSKQLTRLREVFDDPLFERTAYGLK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC
PTPKALSLAPELRQCLQQLAQFTRPDTFEPALSQRQFRMHLVETTYSLTFPHFMPSLLAQ
CCCHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
APGVSLNCQTWRLDTMDRLLRCDIDLAIGCREWDERSPMHVNHIPDDLCHVELVQDYTVC
CCCCEECCCEEEHHHHHHHHHCCCCEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHHHH
LMRRDHPALAQEWNLDTFLSYRHLQVAFGGIEHWLLDDVLQLEGRQRDIAVNMTDFQSAL
HHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
ALCEQSDLILCAPSRYAFAVMKSFELQSLPSPIKLIPGAYLLMWHKHFEHDLSHKWLREL
HHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IISQVLPSITPRV
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA