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The map label for this gene is ydcR [H]

Identifier: 160876678

GI number: 160876678

Start: 4200144

End: 4201556

Strand: Reverse

Name: ydcR [H]

Synonym: Sbal195_3572

Alternate gene names: 160876678

Gene position: 4201556-4200144 (Counterclockwise)

Preceding gene: 160876683

Following gene: 160876677

Centisome position: 78.57

GC content: 50.46

Gene sequence:

>1413_bases
ATGGCGAAATACGAACAGTTAGCGCAGGAATTAAAGACACGAATAGCCCAAGGCGTCTGGCAGGCGGGGGACAAGTTGCC
GTCGCTGCGCCAAACTGTGGCTGATTCGGGTTTGAGTCTGATGACAGTGCTTAATGCCTATCAGCTATTGGAAAGCCAAG
GTGTGATTACGGCGCAGGCAAAATCGGGCTATTTAGTGGCGCCGCAGCCAGAAACCTTTCGCTATCCCGACCGTCAGCGG
CAGATCTATCTCTCTGATAAAGTTGATATTAACGAGTTTGTCTTCTCTGTTTTGCAGGCATCAAAACAGGCGGGGATAGT
GCCCTTTGGCTCAGGTTTTCCCGATCCCAGTTTATTCCCGCAGCAAGCGTTGGCGCGCTCATTAGTCAAAGTCACTCGGC
ACATGTCACCGTCTTTTGCCGCCGATAATTTACCGCCGGGGAATGCGGGGCTGCGTAAGGCGATTTCCCAACGTTATGCC
AAATTGGGCATGAGCATTTCACCCGATGAAATCTTAATTACTTCGGGCGCCATGGAGGCGCTGAACTTGAGTTTAGCGAC
CCTAACTCAAGCGGGGGATTGGGTAGTCATTGAATCCCCGACCTTTTATGGCGCGATGCAGGCGATTGAGCGGCTTAAGC
TTAAGGCCATTGCGGTCGCGACGGATCCACAACAGGGCATTGATCTTGAGGCGCTAGCGGAAGTGTTAAAAACCTACCCA
GTGAAAACCTGCTGGTTGATGAGTCAACATCAAAACCCCTTAGGTTGTAGCTTGTCTGATACTAAAAAACAGGTGCTTTA
TCAGTTACTAAACGAGCATAAAGTCAGTTTAATTGAGGATGATGTTTATCAAGAACTCTATGTCGACTCCAGTGCGCCAA
GGCCTGTAAAAGCCTTCGATACCGAAGGACGGGTGCTGCACTGCGGCTCATTTTCTAAGTCTTTGATTGCAGGTTATCGT
GTCGGCTGGGTGGCGGCGGGACTGCATGCGCCGCAGTTACAACGCTTGCAAGTTATGTCGACGCTATCGACCAGTGCGCC
CATGCAGCTTGCTATCGCCGACTTTATTCAGTCTGCACAATATGAGCGCCATTTGAAGCAGTTACGTAAAAAGTTAGCCG
ATCGCAAATTGGCCATGTATCAGTTATTGCGCGCGCATCTGCCCGAGTCTGTTGGGGTTAACTTTGCACAAGGCGGCTAT
TTTCTTTGGTTAGCGTTGCCTGCACACATGGATGCCACGCAAATTTATTCTCAGGGGATTGAGCGCGGGATCAGTATCGC
TCCCGGAAATCTCTTTAGTAATCAGGTCGAGTTCCGCCATTTTATGCGCTTGAATGCCTCATACGAGTGCTCGCCAGAGA
TAGTCTCTGCTGTCGTAGTGCTGGCCGAACTCATCCGTAACTATTCGCGCTAA

Upstream 100 bases:

>100_bases
TGAGCCTAATATTGGCCCAGCGGTGAAAGCTTGTGTGCCATTAGAGCATGGGATAAGCTGGCTATAACAGACACAGAATA
TATTGATTTGGCTATAACAG

Downstream 100 bases:

>100_bases
CTCGTTAGGTTAGCTTTTTATATGAGCCTGTTATATTAGCTCGCTTTGTTGTTTGGGTTTTTCAGTCAGAAGTTAAATGC
TGAGGTAAAAAGTTTTAGAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MAKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQAKSGYLVAPQPETFRYPDRQR
QIYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFPQQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYA
KLGMSISPDEILITSGAMEALNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYP
VKTCWLMSQHQNPLGCSLSDTKKQVLYQLLNEHKVSLIEDDVYQELYVDSSAPRPVKAFDTEGRVLHCGSFSKSLIAGYR
VGWVAAGLHAPQLQRLQVMSTLSTSAPMQLAIADFIQSAQYERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGY
FLWLALPAHMDATQIYSQGIERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR

Sequences:

>Translated_470_residues
MAKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQAKSGYLVAPQPETFRYPDRQR
QIYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFPQQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYA
KLGMSISPDEILITSGAMEALNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYP
VKTCWLMSQHQNPLGCSLSDTKKQVLYQLLNEHKVSLIEDDVYQELYVDSSAPRPVKAFDTEGRVLHCGSFSKSLIAGYR
VGWVAAGLHAPQLQRLQVMSTLSTSAPMQLAIADFIQSAQYERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGY
FLWLALPAHMDATQIYSQGIERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR
>Mature_469_residues
AKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQAKSGYLVAPQPETFRYPDRQRQ
IYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFPQQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYAK
LGMSISPDEILITSGAMEALNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYPV
KTCWLMSQHQNPLGCSLSDTKKQVLYQLLNEHKVSLIEDDVYQELYVDSSAPRPVKAFDTEGRVLHCGSFSKSLIAGYRV
GWVAAGLHAPQLQRLQVMSTLSTSAPMQLAIADFIQSAQYERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGYF
LWLALPAHMDATQIYSQGIERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=25.2365930599369, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=25.2365930599369, Blast_Score=94, Evalue=3e-19,
Organism=Escherichia coli, GI1787710, Length=471, Percent_Identity=52.4416135881104, Blast_Score=503, Evalue=1e-144,
Organism=Escherichia coli, GI1790797, Length=451, Percent_Identity=34.589800443459, Blast_Score=287, Evalue=8e-79,
Organism=Escherichia coli, GI1786816, Length=390, Percent_Identity=24.8717948717949, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=326, Percent_Identity=24.2331288343558, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321929, Length=337, Percent_Identity=23.7388724035608, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6322401, Length=247, Percent_Identity=25.1012145748988, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21356535, Length=345, Percent_Identity=24.3478260869565, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51965; Mature: 51834

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQA
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC
KSGYLVAPQPETFRYPDRQRQIYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFP
CCCEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
QQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYAKLGMSISPDEILITSGAMEA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHH
LNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYP
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCC
VKTCWLMSQHQNPLGCSLSDTKKQVLYQLLNEHKVSLIEDDVYQELYVDSSAPRPVKAFD
CHHEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TEGRVLHCGSFSKSLIAGYRVGWVAAGLHAPQLQRLQVMSTLSTSAPMQLAIADFIQSAQ
CCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGYFLWLALPAHMDATQIYSQGI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEECCCEEEEEEECCCCCHHHHHHHHH
ERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR
HCCCEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQA
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC
KSGYLVAPQPETFRYPDRQRQIYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFP
CCCEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
QQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYAKLGMSISPDEILITSGAMEA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHH
LNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYP
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCC
VKTCWLMSQHQNPLGCSLSDTKKQVLYQLLNEHKVSLIEDDVYQELYVDSSAPRPVKAFD
CHHEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TEGRVLHCGSFSKSLIAGYRVGWVAAGLHAPQLQRLQVMSTLSTSAPMQLAIADFIQSAQ
CCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGYFLWLALPAHMDATQIYSQGI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEECCCEEEEEEECCCCCHHHHHHHHH
ERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR
HCCCEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]