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The map label for this gene is yeaM [H]

Identifier: 160876683

GI number: 160876683

Start: 4206266

End: 4207042

Strand: Reverse

Name: yeaM [H]

Synonym: Sbal195_3577

Alternate gene names: 160876683

Gene position: 4207042-4206266 (Counterclockwise)

Preceding gene: 160876686

Following gene: 160876678

Centisome position: 78.68

GC content: 47.88

Gene sequence:

>777_bases
ATGCGTACGGTTTATCATCCTCTTACGGCAGAGCAAGAGCCAGTTGCGGATATTTTCTTTAACTATGAAGCTTTCTTGCC
AAATACGGTAACGCCAAAACATCAACATGTTTGGGGACAACTGCAGTTAATCAGCGGTGGAATTATGGAGTTACATGCTG
CAGGGCAACGGTTTTTATCTCCGTCGCAATATGCAATTTGGGTTCCTGCGGGGATAGAGCATGAAAGTTTCACTCGGCGT
AGTATCCATTATTGTTCGATGAATATCGTTGCCGAGCGGGCTGCGGCGTTTCCCCTAGAGACCTGTTTGTTAGCTGTGAC
ATCCATTGCCCAATCGATCGTTAACGACCTACGGGAGCGGCAAGTTAGAGTGGCAAACTCGGCAGCGGATAAACGGCTTG
TTGAGGTTTTGCTCGATCAGCTCACTATCGGCCAAGCTCTGCCGCAATTTTTGCCCACAGTCTCAGATAAACTGTTACAG
CCGTTGTTGCTGGCACTTGAAGCCGACCCTGCGAGTCCTAAGACCTTTAAATCTTGGGCCAATGAATTACACACTACAGA
GCGTACCTTAGCCCGTCGTTGCCAAGAGGCGCTGGGGATGAGTTTTACCGAGTTAAGGCAAAGGCATAAGTTTATCTATT
CATTACAATTGCTGCGTCAGGGGCTAGCTATTAAAGAGGTGGCATTAACGCTCGGCTACAACCAAACCTCACCTTATATC
GTGATGTTTAAAAAGTATGCCCAGTGTTCGCCGGAGCAGTATCGCCGTCGATTATGA

Upstream 100 bases:

>100_bases
CCAGTGCGATTAAATCTGGATTGCTTGAGTGCTATTAAACCAGTTGAGTGCTATTGAATCAGAGAGTGTATTGAGCTAGA
AGGCTTTAAGGACAGACACA

Downstream 100 bases:

>100_bases
TGGCGCATAAGTTTAGTGTGATGGCATATAAGCTTAGTGTGTTGAAAAATGACCTGTTGTTAATTCGAACGCTAGCGGAT
GTTGTGAGGCGATAAGCGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MRTVYHPLTAEQEPVADIFFNYEAFLPNTVTPKHQHVWGQLQLISGGIMELHAAGQRFLSPSQYAIWVPAGIEHESFTRR
SIHYCSMNIVAERAAAFPLETCLLAVTSIAQSIVNDLRERQVRVANSAADKRLVEVLLDQLTIGQALPQFLPTVSDKLLQ
PLLLALEADPASPKTFKSWANELHTTERTLARRCQEALGMSFTELRQRHKFIYSLQLLRQGLAIKEVALTLGYNQTSPYI
VMFKKYAQCSPEQYRRRL

Sequences:

>Translated_258_residues
MRTVYHPLTAEQEPVADIFFNYEAFLPNTVTPKHQHVWGQLQLISGGIMELHAAGQRFLSPSQYAIWVPAGIEHESFTRR
SIHYCSMNIVAERAAAFPLETCLLAVTSIAQSIVNDLRERQVRVANSAADKRLVEVLLDQLTIGQALPQFLPTVSDKLLQ
PLLLALEADPASPKTFKSWANELHTTERTLARRCQEALGMSFTELRQRHKFIYSLQLLRQGLAIKEVALTLGYNQTSPYI
VMFKKYAQCSPEQYRRRL
>Mature_258_residues
MRTVYHPLTAEQEPVADIFFNYEAFLPNTVTPKHQHVWGQLQLISGGIMELHAAGQRFLSPSQYAIWVPAGIEHESFTRR
SIHYCSMNIVAERAAAFPLETCLLAVTSIAQSIVNDLRERQVRVANSAADKRLVEVLLDQLTIGQALPQFLPTVSDKLLQ
PLLLALEADPASPKTFKSWANELHTTERTLARRCQEALGMSFTELRQRHKFIYSLQLLRQGLAIKEVALTLGYNQTSPYI
VMFKKYAQCSPEQYRRRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=243, Percent_Identity=29.2181069958848, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29338; Mature: 29338

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVYHPLTAEQEPVADIFFNYEAFLPNTVTPKHQHVWGQLQLISGGIMELHAAGQRFLS
CCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCC
PSQYAIWVPAGIEHESFTRRSIHYCSMNIVAERAAAFPLETCLLAVTSIAQSIVNDLRER
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
QVRVANSAADKRLVEVLLDQLTIGQALPQFLPTVSDKLLQPLLLALEADPASPKTFKSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
NELHTTERTLARRCQEALGMSFTELRQRHKFIYSLQLLRQGLAIKEVALTLGYNQTSPYI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEE
VMFKKYAQCSPEQYRRRL
EEEHHHHCCCHHHHHHCC
>Mature Secondary Structure
MRTVYHPLTAEQEPVADIFFNYEAFLPNTVTPKHQHVWGQLQLISGGIMELHAAGQRFLS
CCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCC
PSQYAIWVPAGIEHESFTRRSIHYCSMNIVAERAAAFPLETCLLAVTSIAQSIVNDLRER
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
QVRVANSAADKRLVEVLLDQLTIGQALPQFLPTVSDKLLQPLLLALEADPASPKTFKSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
NELHTTERTLARRCQEALGMSFTELRQRHKFIYSLQLLRQGLAIKEVALTLGYNQTSPYI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEE
VMFKKYAQCSPEQYRRRL
EEEHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]