Click here to switch to the map view.

The map label for this gene is qseB [H]

Identifier: 160875042

GI number: 160875042

Start: 2298146

End: 2298805

Strand: Direct

Name: qseB [H]

Synonym: Sbal195_1927

Alternate gene names: 160875042

Gene position: 2298146-2298805 (Clockwise)

Preceding gene: 160875041

Following gene: 160875043

Centisome position: 42.98

GC content: 46.52

Gene sequence:

>660_bases
ATGCGTATTATGTTGGTTGAAGACAATGAGTTATTAGCCCAAGGGATTTGCTTAAGTTTGGCAAAGCTGGGCATGCAGGT
TGATCACCTTAATAGTTATCAGCAAGCATTACAGGGTGTTAAAAATGAAAGCTTCAGTGCCATAGTGCTCGATCTGGGTT
TACCGGACGGTAACGGTAAAGATTTACTCAAGGCGTGGCGTCAGCAGGGGGTGTCAATTCCTACAATAGTCCTGACCGCC
AATACGGATTTTGACACTAAGCTCGAGTGCTTAGACATGGGCGCCGATGATTATCTCGGTAAACCCTTCGATGTGCGAGA
GCTCGCCGCTCGCATTCGCGCCATTGTCAGACGCCAGTACGGACTCGATCACAACAGTTTGATTATTGGTGCTTTGTGTA
TTGATTTAAATACCCGCGAAGTGACCTTTCGCGATCAAAATGTGCTGCTTTCGCGGCGTGAATTCCAATTATTGCTTGAA
CTCGCACAATCAGCAGGGCGCGTATTGACGCGCAGCCAACTGGAACAGTTAACCTATGGCTGGGATGAAGTCGGCAGCAA
CTCGATTGAAGTACACATTCATCATTTGCGTAAAAAGCTCGCCAATGAGCTGATTAAAACCGTGCGTGGAATCGGCTATA
CCTTGATTGAAATAAACTAA

Upstream 100 bases:

>100_bases
CTACAGGGCCAGGATGCGGAAGCATTTTTACAGCAACAAGATGTTAAGTTTAGTATTTTCCGTTAAGGGTTCTTTTAAAA
GGCTCTGTTAAGGACATTGA

Downstream 100 bases:

>100_bases
TTCACTGAATTAAGTGACAATACTCACGTTTGTGGGTATTGATACCTCAATCATTCGCTGAGGGTAAACGTTAGGAAACT
AAAGTGATTCGATTAAAGGG

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGKDLLKAWRQQGVSIPTIVLTA
NTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQYGLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLE
LAQSAGRVLTRSQLEQLTYGWDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEIN

Sequences:

>Translated_219_residues
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGKDLLKAWRQQGVSIPTIVLTA
NTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQYGLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLE
LAQSAGRVLTRSQLEQLTYGWDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEIN
>Mature_219_residues
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGKDLLKAWRQQGVSIPTIVLTA
NTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQYGLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLE
LAQSAGRVLTRSQLEQLTYGWDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEIN

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=43.5779816513761, Blast_Score=186, Evalue=8e-49,
Organism=Escherichia coli, GI1790552, Length=217, Percent_Identity=40.5529953917051, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=35.3211009174312, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=32.5892857142857, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=34.3612334801762, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=33.7837837837838, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=31.3636363636364, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=32.0175438596491, Blast_Score=106, Evalue=9e-25,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=31.8385650224215, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI2367329, Length=177, Percent_Identity=38.4180790960452, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=32.2869955156951, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=27.027027027027, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=26.8722466960352, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI145693140, Length=234, Percent_Identity=32.9059829059829, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24612; Mature: 24612

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGK
CEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCH
DLLKAWRQQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY
HHHHHHHHCCCCCCEEEEEECCCCCCCHHEEECCCHHHCCCCCCHHHHHHHHHHHHHHHH
GLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQLEQLTYG
CCCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEIN
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGK
CEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCH
DLLKAWRQQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY
HHHHHHHHCCCCCCEEEEEECCCCCCCHHEEECCCHHHCCCCCCHHHHHHHHHHHHHHHH
GLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQLEQLTYG
CCCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WDEVGSNSIEVHIHHLRKKLANELIKTVRGIGYTLIEIN
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]