Click here to switch to the map view.

The map label for this gene is rarD [C]

Identifier: 160873518

GI number: 160873518

Start: 444930

End: 445814

Strand: Reverse

Name: rarD [C]

Synonym: Sbal195_0393

Alternate gene names: 160873518

Gene position: 445814-444930 (Counterclockwise)

Preceding gene: 160873519

Following gene: 160873512

Centisome position: 8.34

GC content: 46.44

Gene sequence:

>885_bases
ATGCAAGATCTTGAATACCGCAAAGGGATCCTACTCGCCGTCAGTGCTTACTGTATGTGGGGTTTTGCGCCTTTATATTT
CAAATTACTCAACCATGTCTCTGCTACCGAAATTTTGCTCCATCGCGTAATTTGGTCGTTCGTGTTTATGCTGATCATCA
TGCAATTTATTGGCGGGTTCTCACGCTTACGCTTACTGTTTAAACAGCCTAAACAGTTGATGGTTCTCACCATTACCTCC
ATACTGATCGCGGGAAACTGGCTGCTATTTATCTGGGCGGTGAATAACGATCACATGCTTGATGCCAGCTTAGGTTACTT
TATCAACCCTCTGCTCAACGTCTTGCTTGGTATGTTATTTCTAGGCGAAAGGTTACGTAAGCTGCAATGGTTTGCGGTCG
CACTCGCCAGTGCTGGTGTGTTGATCCAATTAATCTCTTTTGGCTCGATTCCAATTGTCTCACTGGCACTCGCGGGCACC
TTTGGTTTCTATGCGCTGCTGCGAAAAAAGGTCAATGTGGATGCTAAGGCTGGCTTATTGGTCGAAACCGCAGTGTTATT
ACCCGTCGCGCTAATTTACCTAGTCGCGACCTTAGACACAGCAACAGCGAGCATGCTGACCAACGATTGGCAACTGAATC
TGATGTTAATGGCAGCGGGAATAGTGACCACGATTCCTTTACTCTGTTTTGCAGGGGCGGCGGTACGTATTCCATTGTCT
ATGCTTGGATTTTTCCAATATATCGGCCCAAGTATCATGTTCATCCTAGCAGTGAGTCTGTTCAATGAGCCCTTCGATGC
AGAAAAAGGCGTGACCTTCGGTTTTATCTGGAGTGCCCTGTTAGTCTTTACCTTAGACATGGCCTATAAACGCAAAACGG
CGTGA

Upstream 100 bases:

>100_bases
TTATCGAGATATTCTGTAACCAAAAGAACGCGGCGATGCCCTTGAGTCAGCGGTCAGACACACCTACAATCGCCGTCTTG
TTGTCCTTCGAAGATGTCTC

Downstream 100 bases:

>100_bases
TCATTATCACGCCGATACACAGTTGCAGAAGTGATGATATATGATGATTACTTTTGTAACTTTGCTAAAAATTCACTCCC
TTGCGGCACTGTCAGTAATA

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MQDLEYRKGILLAVSAYCMWGFAPLYFKLLNHVSATEILLHRVIWSFVFMLIIMQFIGGFSRLRLLFKQPKQLMVLTITS
ILIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLFLGERLRKLQWFAVALASAGVLIQLISFGSIPIVSLALAGT
FGFYALLRKKVNVDAKAGLLVETAVLLPVALIYLVATLDTATASMLTNDWQLNLMLMAAGIVTTIPLLCFAGAAVRIPLS
MLGFFQYIGPSIMFILAVSLFNEPFDAEKGVTFGFIWSALLVFTLDMAYKRKTA

Sequences:

>Translated_294_residues
MQDLEYRKGILLAVSAYCMWGFAPLYFKLLNHVSATEILLHRVIWSFVFMLIIMQFIGGFSRLRLLFKQPKQLMVLTITS
ILIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLFLGERLRKLQWFAVALASAGVLIQLISFGSIPIVSLALAGT
FGFYALLRKKVNVDAKAGLLVETAVLLPVALIYLVATLDTATASMLTNDWQLNLMLMAAGIVTTIPLLCFAGAAVRIPLS
MLGFFQYIGPSIMFILAVSLFNEPFDAEKGVTFGFIWSALLVFTLDMAYKRKTA
>Mature_294_residues
MQDLEYRKGILLAVSAYCMWGFAPLYFKLLNHVSATEILLHRVIWSFVFMLIIMQFIGGFSRLRLLFKQPKQLMVLTITS
ILIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLFLGERLRKLQWFAVALASAGVLIQLISFGSIPIVSLALAGT
FGFYALLRKKVNVDAKAGLLVETAVLLPVALIYLVATLDTATASMLTNDWQLNLMLMAAGIVTTIPLLCFAGAAVRIPLS
MLGFFQYIGPSIMFILAVSLFNEPFDAEKGVTFGFIWSALLVFTLDMAYKRKTA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=57.2881355932203, Blast_Score=350, Evalue=9e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32691; Mature: 32691

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLEYRKGILLAVSAYCMWGFAPLYFKLLNHVSATEILLHRVIWSFVFMLIIMQFIGGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCH
SRLRLLFKQPKQLMVLTITSILIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLF
HHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
LGERLRKLQWFAVALASAGVLIQLISFGSIPIVSLALAGTFGFYALLRKKVNVDAKAGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VETAVLLPVALIYLVATLDTATASMLTNDWQLNLMLMAAGIVTTIPLLCFAGAAVRIPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MLGFFQYIGPSIMFILAVSLFNEPFDAEKGVTFGFIWSALLVFTLDMAYKRKTA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQDLEYRKGILLAVSAYCMWGFAPLYFKLLNHVSATEILLHRVIWSFVFMLIIMQFIGGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCH
SRLRLLFKQPKQLMVLTITSILIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLF
HHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
LGERLRKLQWFAVALASAGVLIQLISFGSIPIVSLALAGTFGFYALLRKKVNVDAKAGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VETAVLLPVALIYLVATLDTATASMLTNDWQLNLMLMAAGIVTTIPLLCFAGAAVRIPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MLGFFQYIGPSIMFILAVSLFNEPFDAEKGVTFGFIWSALLVFTLDMAYKRKTA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]