Click here to switch to the map view.

The map label for this gene is slmA

Identifier: 160873510

GI number: 160873510

Start: 438957

End: 439550

Strand: Reverse

Name: slmA

Synonym: Sbal195_0385

Alternate gene names: 160873510

Gene position: 439550-438957 (Counterclockwise)

Preceding gene: 160873511

Following gene: 160873509

Centisome position: 8.22

GC content: 45.96

Gene sequence:

>594_bases
ATGGCTGTAAGCCCAAAAATTAATCGTCGTGAACATATTTTGCAATGTCTAGCACAGATGCTAGAAACCAACCCAGGACA
AAGGATCACCACAGCGAAACTGGCCTCAGAAGTCGGTGTATCGGAAGCCGCCCTGTACCGTCACTTCCCGAGTAAAGCAC
GGATGTTCGAAGGCTTAATCGAATTTATCGAAGAGTCGTTATTGTCGCGCATCAATTTAATCATGGATGACGAAAAAGAC
ACCATGAAGCGCTGCCAACTCGTGCTGCAACTGTTGCTGATTTTTGCCGAGCGTAACCCAGGTATTTCCCGCGTCCTCAA
TGGTGATGCGCTGCTCGGAGAAAACGAGCGTCTGCGCAGCCGCATTAGTAATTTATTTGCCAAAATTGAAACCCAGTTGA
AGCAAATACTACGGGAAAAAACCCTGCGGGAAGGCAAAGGCTTCAACTTAGACGAAGCCATATTAGCCAATTTACTGTTA
GCCTTTGCCGAAGGGCGAATCGCTCAATTTGTACGAAGTGAATTCAAACTCAAACCTACCACACACTTCGATGAACAGTG
GCGTTTTATCCAACATCAGCTTTTACAAAGCTAA

Upstream 100 bases:

>100_bases
CTCGTTGATGAGTTCGACAGCTCAGATCGTGGCGAAGGCGGATTTGGCCATTCAGGCACTAAATAATCCCCTAAGTCGTT
ATTGAGCCAAGGATACTGCA

Downstream 100 bases:

>100_bases
TGATTTTTCAACATAAAGGACGGTAACTATCGTCCTTTATTTTTAACCTTCCCTTCTTGTCTCACTAGCACTTTTGTTTT
ATCCTCGAAAAAACATTTTC

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MAVSPKINRREHILQCLAQMLETNPGQRITTAKLASEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDDEKD
TMKRCQLVLQLLLIFAERNPGISRVLNGDALLGENERLRSRISNLFAKIETQLKQILREKTLREGKGFNLDEAILANLLL
AFAEGRIAQFVRSEFKLKPTTHFDEQWRFIQHQLLQS

Sequences:

>Translated_197_residues
MAVSPKINRREHILQCLAQMLETNPGQRITTAKLASEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDDEKD
TMKRCQLVLQLLLIFAERNPGISRVLNGDALLGENERLRSRISNLFAKIETQLKQILREKTLREGKGFNLDEAILANLLL
AFAEGRIAQFVRSEFKLKPTTHFDEQWRFIQHQLLQS
>Mature_196_residues
AVSPKINRREHILQCLAQMLETNPGQRITTAKLASEVGVSEAALYRHFPSKARMFEGLIEFIEESLLSRINLIMDDEKDT
MKRCQLVLQLLLIFAERNPGISRVLNGDALLGENERLRSRISNLFAKIETQLKQILREKTLREGKGFNLDEAILANLLLA
FAEGRIAQFVRSEFKLKPTTHFDEQWRFIQHQLLQS

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082302, Length=192, Percent_Identity=61.9791666666667, Blast_Score=230, Evalue=5e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SLMA_SHEB2 (B8E4J2)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002356356.1
- ProteinModelPortal:   B8E4J2
- GeneID:   7089537
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_0399
- HOGENOM:   HBG297015
- OMA:   EKNPGMT
- ProtClustDB:   PRK09480
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_01839
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 22690; Mature: 22559

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSPKINRREHILQCLAQMLETNPGQRITTAKLASEVGVSEAALYRHFPSKARMFEGLI
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHH
EFIEESLLSRINLIMDDEKDTMKRCQLVLQLLLIFAERNPGISRVLNGDALLGENERLRS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCHHHHH
RISNLFAKIETQLKQILREKTLREGKGFNLDEAILANLLLAFAEGRIAQFVRSEFKLKPT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
THFDEQWRFIQHQLLQS
CCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVSPKINRREHILQCLAQMLETNPGQRITTAKLASEVGVSEAALYRHFPSKARMFEGLI
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHH
EFIEESLLSRINLIMDDEKDTMKRCQLVLQLLLIFAERNPGISRVLNGDALLGENERLRS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCHHHHH
RISNLFAKIETQLKQILREKTLREGKGFNLDEAILANLLLAFAEGRIAQFVRSEFKLKPT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
THFDEQWRFIQHQLLQS
CCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA