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The map label for this gene is sufD

Identifier: 16080322

GI number: 16080322

Start: 3358664

End: 3359977

Strand: Reverse

Name: sufD

Synonym: BSU32700

Alternate gene names: 16080322

Gene position: 3359977-3358664 (Counterclockwise)

Preceding gene: 16080323

Following gene: 16080321

Centisome position: 79.7

GC content: 46.12

Gene sequence:

>1314_bases
ATGACACTAGGTACAAAACTATCCGTAGATCAGGAGTATCTCAAAAGCTTTTCCGAAAAGCACCAAGAACCTGCCTGGCT
GAAGAACCTGCGCTTACAGGCTCTTGAACAAGCTGAGGATCTGCCGATGCCGAAACCTGACAAAACAAAAATCACAAACT
GGAACTTCACGAATTTCGCGAAGCATACAGTGGATAACGAACCGCTTTCTTCATTAGAAGATTTGACTGATGAAGTAAAA
GCGCTGATCGACATTGAAAACGAAGATAAAACATTATACGTACAGCGTGACCAGACGCCGGCACATCTTTCTCTTTCTCA
AGAATTGAAAGACAAAGGCGTCATCTTCACTGATATTCTGACTGCTGCACGCGAGCACAGCGACTTGGTGGAGAAATACT
TTATGAAGGACGGCGTGAAGGTTGACGAACATAAGTTAACTGCACTTCACGCGGCTCTTGTTAACGGAGGAGCATTCCTT
TATGTTCCGAAAAATGTTCAGGTGGAGACGCCGGTTCAGGCTGTTTATGTCCACGAAAGCAATGATACAGCTCTATTCAA
CCACGTGCTGATTGTGGCTGAAGACCACAGCTCTGTAACATATGTAGAAAACTACATCAGCACTGTAAACCCGAAAGACG
CTGTCTTCAATATTATCAGTGAGGTCATCACAGGTGATAATGCCAGCGTGACATACGGTGCGGTGGATAATCTGTCAAGC
GGTGTGACAACTTATGTGAACCGCCGCGGTGCTGCGCGCGGACGCGACAGCAAAATCGAGTGGGCTCTCGGCCTGATGAA
CGATGGCGACACGATTTCCGAAAACACAACAAACCTTTACGGTGACGGCACATACGGCGATACGAAAACGGTTGTTGTCG
GAAGAGGAGAGCAAACAGAAAACTTCACAACACAAATCATCCATTTCGGTAAAGCTTCTGAAGGCTATATCTTGAAGCAC
GGTGTGATGAAGGATTCCGCTTCTTCTATCTTTAACGGAATCGGCAAAATCGAACATGGCGCTTCTAAAGCGAATGCGGA
GCAAGAATCACGCGTGCTGATGCTTAGCGAAAAAGCACGCGGAGACGCAAACCCTATTCTTTTAATTGACGAAGACGATG
TAACTGCAGGACATGCGGCATCTGTCGGCCGTGTGGACCCTATTCAGCTTTACTACCTGATGAGCCGCGGAATTCCGAAA
GAAGAAGCAGAACGCTTAGTCATTTACGGATTCCTTGCACCGGTAGTAAATGAACTTCCGATTGAAGGCGTTAAGAAACA
ATTAGTTTCTGTTATCGAAAGGAAAGTGAAGTAA

Upstream 100 bases:

>100_bases
CACAGCGTCTTGAAGCAGAAGGTTATGACTGGATCAAACAAGAACTTGGCATTGAAGACGAAACTGTTGGCCAAGAAGCG
TAAGCGTTAGGGGGATTAAT

Downstream 100 bases:

>100_bases
TGAATATCACAGATATTCGTGAACAGTTCCCGATCCTTCATCAGCAAGTGAACGGACATGATCTCGTTTATCTCGACAGC
GCGGCGACTTCCCAGAAGCC

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MTLGTKLSVDQEYLKSFSEKHQEPAWLKNLRLQALEQAEDLPMPKPDKTKITNWNFTNFAKHTVDNEPLSSLEDLTDEVK
ALIDIENEDKTLYVQRDQTPAHLSLSQELKDKGVIFTDILTAAREHSDLVEKYFMKDGVKVDEHKLTALHAALVNGGAFL
YVPKNVQVETPVQAVYVHESNDTALFNHVLIVAEDHSSVTYVENYISTVNPKDAVFNIISEVITGDNASVTYGAVDNLSS
GVTTYVNRRGAARGRDSKIEWALGLMNDGDTISENTTNLYGDGTYGDTKTVVVGRGEQTENFTTQIIHFGKASEGYILKH
GVMKDSASSIFNGIGKIEHGASKANAEQESRVLMLSEKARGDANPILLIDEDDVTAGHAASVGRVDPIQLYYLMSRGIPK
EEAERLVIYGFLAPVVNELPIEGVKKQLVSVIERKVK

Sequences:

>Translated_437_residues
MTLGTKLSVDQEYLKSFSEKHQEPAWLKNLRLQALEQAEDLPMPKPDKTKITNWNFTNFAKHTVDNEPLSSLEDLTDEVK
ALIDIENEDKTLYVQRDQTPAHLSLSQELKDKGVIFTDILTAAREHSDLVEKYFMKDGVKVDEHKLTALHAALVNGGAFL
YVPKNVQVETPVQAVYVHESNDTALFNHVLIVAEDHSSVTYVENYISTVNPKDAVFNIISEVITGDNASVTYGAVDNLSS
GVTTYVNRRGAARGRDSKIEWALGLMNDGDTISENTTNLYGDGTYGDTKTVVVGRGEQTENFTTQIIHFGKASEGYILKH
GVMKDSASSIFNGIGKIEHGASKANAEQESRVLMLSEKARGDANPILLIDEDDVTAGHAASVGRVDPIQLYYLMSRGIPK
EEAERLVIYGFLAPVVNELPIEGVKKQLVSVIERKVK
>Mature_436_residues
TLGTKLSVDQEYLKSFSEKHQEPAWLKNLRLQALEQAEDLPMPKPDKTKITNWNFTNFAKHTVDNEPLSSLEDLTDEVKA
LIDIENEDKTLYVQRDQTPAHLSLSQELKDKGVIFTDILTAAREHSDLVEKYFMKDGVKVDEHKLTALHAALVNGGAFLY
VPKNVQVETPVQAVYVHESNDTALFNHVLIVAEDHSSVTYVENYISTVNPKDAVFNIISEVITGDNASVTYGAVDNLSSG
VTTYVNRRGAARGRDSKIEWALGLMNDGDTISENTTNLYGDGTYGDTKTVVVGRGEQTENFTTQIIHFGKASEGYILKHG
VMKDSASSIFNGIGKIEHGASKANAEQESRVLMLSEKARGDANPILLIDEDDVTAGHAASVGRVDPIQLYYLMSRGIPKE
EAERLVIYGFLAPVVNELPIEGVKKQLVSVIERKVK

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family

Homologues:

Organism=Escherichia coli, GI87081955, Length=441, Percent_Identity=24.4897959183673, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1787971, Length=115, Percent_Identity=33.9130434782609, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SUFD_BACSU (O32165)

Other databases:

- EMBL:   AL009126
- PIR:   G70019
- RefSeq:   NP_391149.1
- ProteinModelPortal:   O32165
- EnsemblBacteria:   EBBACT00000003283
- GeneID:   938871
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU32700
- NMPDR:   fig|224308.1.peg.3275
- GenoList:   BSU32700
- GeneTree:   EBGT00050000000587
- HOGENOM:   HBG711081
- OMA:   LEIMADD
- PhylomeDB:   O32165
- ProtClustDB:   CLSK2460955
- BioCyc:   BSUB:BSU32700-MONOMER
- InterPro:   IPR000825
- InterPro:   IPR011542
- TIGRFAMs:   TIGR01981

Pfam domain/function: PF01458 UPF0051

EC number: NA

Molecular weight: Translated: 48294; Mature: 48163

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGTKLSVDQEYLKSFSEKHQEPAWLKNLRLQALEQAEDLPMPKPDKTKITNWNFTNFA
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHH
KHTVDNEPLSSLEDLTDEVKALIDIENEDKTLYVQRDQTPAHLSLSQELKDKGVIFTDIL
HHCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCEEEHHHHHHHCCCCHHHHH
TAAREHSDLVEKYFMKDGVKVDEHKLTALHAALVNGGAFLYVPKNVQVETPVQAVYVHES
HHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCEEEEECCCCEEECCEEEEEEECC
NDTALFNHVLIVAEDHSSVTYVENYISTVNPKDAVFNIISEVITGDNASVTYGAVDNLSS
CCCEEEEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCHHCCCC
GVTTYVNRRGAARGRDSKIEWALGLMNDGDTISENTTNLYGDGTYGDTKTVVVGRGEQTE
CHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCC
NFTTQIIHFGKASEGYILKHGVMKDSASSIFNGIGKIEHGASKANAEQESRVLMLSEKAR
CCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCEEEEEECCCC
GDANPILLIDEDDVTAGHAASVGRVDPIQLYYLMSRGIPKEEAERLVIYGFLAPVVNELP
CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHEEHHCCCCHHHHCEEEEEEHHHHHHHHCC
IEGVKKQLVSVIERKVK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLGTKLSVDQEYLKSFSEKHQEPAWLKNLRLQALEQAEDLPMPKPDKTKITNWNFTNFA
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHH
KHTVDNEPLSSLEDLTDEVKALIDIENEDKTLYVQRDQTPAHLSLSQELKDKGVIFTDIL
HHCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCEEEHHHHHHHCCCCHHHHH
TAAREHSDLVEKYFMKDGVKVDEHKLTALHAALVNGGAFLYVPKNVQVETPVQAVYVHES
HHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCEEEEECCCCEEECCEEEEEEECC
NDTALFNHVLIVAEDHSSVTYVENYISTVNPKDAVFNIISEVITGDNASVTYGAVDNLSS
CCCEEEEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCHHCCCC
GVTTYVNRRGAARGRDSKIEWALGLMNDGDTISENTTNLYGDGTYGDTKTVVVGRGEQTE
CHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCC
NFTTQIIHFGKASEGYILKHGVMKDSASSIFNGIGKIEHGASKANAEQESRVLMLSEKAR
CCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCEEEEEECCCC
GDANPILLIDEDDVTAGHAASVGRVDPIQLYYLMSRGIPKEEAERLVIYGFLAPVVNELP
CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHEEHHCCCCHHHHCEEEEEEHHHHHHHHCC
IEGVKKQLVSVIERKVK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377