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The map label for this gene is yurQ

Identifier: 16080315

GI number: 16080315

Start: 3352312

End: 3352686

Strand: Reverse

Name: yurQ

Synonym: BSU32620

Alternate gene names: 16080315

Gene position: 3352686-3352312 (Counterclockwise)

Preceding gene: 16080316

Following gene: 16080314

Centisome position: 79.53

GC content: 37.6

Gene sequence:

>375_bases
TTGATAAAAATTGATATACCCGCACCGAATGTCACCATCACTGAACGACAGCAGTCAGCTAATGATAACGAGCCGAAGAT
AAAACCGATTCACGGATTCATCGACTTTCACCAGATCCCAAGGGACAAAGGCGGCATTTTTATGTTTTACAACATTCATG
ACGAGCTGCTGTTTGTCGGTAAAGCCAGAAAGTTAAGACAGAGAATTAAGAAGCATTTCGAAGACACTGTTTCACCGATC
AAACATCACAGAGATGAAGTTTATAAAATTGAGGTATGTGTAGTTGATGATCCAATGGAAAGAGAGATTTACGAAACATA
TATCATCAATACACAGCACTCGAAGTACAATATAGACAAGGTATTTTTTAAATAA

Upstream 100 bases:

>100_bases
AGTAAGAGCATGACAAACAAATATAATAAAGCTGTTCTAGCTTTTCTTTTCTGTATGTGTTAGCATTTATCTTTAATGAA
AAAGAGGACGTGAACTGATT

Downstream 100 bases:

>100_bases
GACGTCAGTCTGCGGATTGAACAGCGAAGCCAGAGCTTAAGTCAAGTTCTGGCTTTTGATTTGGGCATTTTTTCGCATAT
AGACCCTTTGTCTGTCATCC

Product: excinuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MIKIDIPAPNVTITERQQSANDNEPKIKPIHGFIDFHQIPRDKGGIFMFYNIHDELLFVGKARKLRQRIKKHFEDTVSPI
KHHRDEVYKIEVCVVDDPMEREIYETYIINTQHSKYNIDKVFFK

Sequences:

>Translated_124_residues
MIKIDIPAPNVTITERQQSANDNEPKIKPIHGFIDFHQIPRDKGGIFMFYNIHDELLFVGKARKLRQRIKKHFEDTVSPI
KHHRDEVYKIEVCVVDDPMEREIYETYIINTQHSKYNIDKVFFK
>Mature_124_residues
MIKIDIPAPNVTITERQQSANDNEPKIKPIHGFIDFHQIPRDKGGIFMFYNIHDELLFVGKARKLRQRIKKHFEDTVSPI
KHHRDEVYKIEVCVVDDPMEREIYETYIINTQHSKYNIDKVFFK

Specific function: Unknown

COG id: COG0322

COG function: function code L; Nuclease subunit of the excinuclease complex

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YURQ_BACSU (O32158)

Other databases:

- EMBL:   AL009126
- PIR:   H70018
- RefSeq:   NP_391142.1
- ProteinModelPortal:   O32158
- SMR:   O32158
- EnsemblBacteria:   EBBACT00000000177
- GeneID:   936694
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU32620
- NMPDR:   fig|224308.1.peg.3268
- GenoList:   BSU32620
- GeneTree:   EBGT00050000002416
- HOGENOM:   HBG338294
- OMA:   MEREIYE
- ProtClustDB:   CLSK887837
- BioCyc:   BSUB:BSU32620-MONOMER
- GO:   GO:0005622
- InterPro:   IPR014527
- InterPro:   IPR000305
- PIRSF:   PIRSF026568
- SMART:   SM00465

Pfam domain/function: PF01541 GIY-YIG; SSF82771 UvrC_N

EC number: NA

Molecular weight: Translated: 14810; Mature: 14810

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIDIPAPNVTITERQQSANDNEPKIKPIHGFIDFHQIPRDKGGIFMFYNIHDELLFVG
CEEEECCCCCCEEECCCCCCCCCCCCEEEEECEEEHHHCCCCCCCEEEEEECCCEEEEEC
KARKLRQRIKKHFEDTVSPIKHHRDEVYKIEVCVVDDPMEREIYETYIINTQHSKYNIDK
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHEEHEEEECCCCCCCCEE
VFFK
EEEC
>Mature Secondary Structure
MIKIDIPAPNVTITERQQSANDNEPKIKPIHGFIDFHQIPRDKGGIFMFYNIHDELLFVG
CEEEECCCCCCEEECCCCCCCCCCCCEEEEECEEEHHHCCCCCCCEEEEEECCCEEEEEC
KARKLRQRIKKHFEDTVSPIKHHRDEVYKIEVCVVDDPMEREIYETYIINTQHSKYNIDK
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHEEHEEEECCCCCCCCEE
VFFK
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377