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The map label for this gene is ytcP

Identifier: 16080069

GI number: 16080069

Start: 3087321

End: 3088181

Strand: Reverse

Name: ytcP

Synonym: BSU30170

Alternate gene names: 16080069

Gene position: 3088181-3087321 (Counterclockwise)

Preceding gene: 255767693

Following gene: 255767692

Centisome position: 73.26

GC content: 43.9

Gene sequence:

>861_bases
CTGAAAAACCGTCTGTTTGATATGTTGATTTATGGTTTCTTGCTGATGTTCGCTTTAATATGCGTACTTCCGTTCATTCA
TGTTATCGCAGCATCCTTTGCCACAGTAGAAGAAGTCGTGTCGAAAAAATTTATTTTAATACCGACCACTTTTTCGCTAG
ATGCTTATCGCTACATTTTTTCAACAGATATTATTTATAAGAGTTTGCTTGTTTCTGTGTTTGTGACAGTGATAGGCACT
GCGGTCAGCATGTTTCTTTCGTCACTGATGGCTTACGGGTTATCCCGCCGTGATTTAATCGGCCGGCAGCCGCTCATGTT
TCTCGTCGTATTTACGATGCTGTTTAGCGGCGGCATGATTCCGACTTTCCTTGTGGTCAAATCGCTTGGATTGCTCGATT
CTTACTGGGCGCTTATTTTGCCGACAGCCATTAATGCCTTTAACCTGATCATTCTGAAAAACTTCTTTCAAAATATCCCG
TCAAGCCTGGAAGAGTCCGCGAAAATTGACGGGTGCAATGATCTGGGCATATTCTTTAAAATTGTGCTGCCGCTGTCTCT
TCCTGCGATCGCAACGATTTCACTATTTTATGCGGTCACGTATTGGAACACGTATATGACAGCGATCTTGTACTTAAATG
ATTCAGCAAAATGGCCAATTCAGGTGCTTCTGCGCCAAATCGTCATTGTATCAAGCGGTATGCAGGGGGATATGTCTGAA
ATGGGGTCGGGCAGCCCGCCGCCTGAGCAAACCATTAAAATGGCGGTCATAGTGGTGGCGACCATCCCTGTTCTGCTTGT
CTATCCGTTTATACAAAAGCATTTTGCAAAAGGAGCTTTGCTGGGATCTGTCAAAGGATAA

Upstream 100 bases:

>100_bases
AGATTTGCTACATTTTAGACACGATATCGTCACATGCTGAGCTCGGTTTCCAAAAATATGATAACGCTTACAAAGGGAGG
TGGGAGCTATCGCACATTCA

Downstream 100 bases:

>100_bases
AGAAATATGAAACGGAGGGGTACGATGGGAAACAAATGGAGGGTGCTTTTGATTGTGCTTGTACTGGCACTCGGCGGAGT
GCTGGCGGGCTGTAAAGGAA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGT
AVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIP
SSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSE
MGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG

Sequences:

>Translated_286_residues
MKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGT
AVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIP
SSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSE
MGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG
>Mature_286_residues
MKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGT
AVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIP
SSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSE
MGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787571, Length=296, Percent_Identity=28.7162162162162, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789860, Length=158, Percent_Identity=27.2151898734177, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTCP_BACSU (P53561)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- EMBL:   U51868
- PIR:   G69989
- RefSeq:   NP_390895.1
- ProteinModelPortal:   P53561
- SMR:   P53561
- EnsemblBacteria:   EBBACT00000000333
- GeneID:   938095
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30170
- NMPDR:   fig|224308.1.peg.3020
- GenoList:   BSU30170
- GeneTree:   EBGT00070000032216
- HOGENOM:   HBG729451
- OMA:   IQVLLRQ
- ProtClustDB:   CLSK872716
- BioCyc:   BSUB:BSU30170-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 31694; Mature: 31694

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x100a4a60)-; HASH(0x117d9f24)-; HASH(0x115f3ccc)-; HASH(0x11ae4824)-; HASH(0x11ccbd18)-; HASH(0x10805d48)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEECHHHHHHHH
STDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCCH
PTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHH
IVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHH
MGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEECHHHHHHHH
STDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCCH
PTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHH
IVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHH
MGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940