Click here to switch to the map view.

The map label for this gene is ytrP

Identifier: 16080017

GI number: 16080017

Start: 3033696

End: 3035435

Strand: Reverse

Name: ytrP

Synonym: BSU29650

Alternate gene names: 16080017

Gene position: 3035435-3033696 (Counterclockwise)

Preceding gene: 16080019

Following gene: 16080015

Centisome position: 72.0

GC content: 43.28

Gene sequence:

>1740_bases
ATGGTAGAACAAACTAAAGATCAATTATCCGCCTTTCATTATCATATGCTCGATTTTTTATTAACCAAATCTGAAAAAGT
CACATTCACCGACTCTTTCATATGGCTGACTTCGGCTATTCAAACCTATTTTTCAACCCTTTGTGTTTCGCTTACACCGT
CACCATCAGACTTTGTGACAAAACTGGCAGATGGTGAAGCGCGTTTTTCCGCTTCAAAAATAAACGCTTCATGTTATCTG
ATTGAGGACGGCTCCGGCAGGCGTTTCCATCTTGCGTGCAGGCAGGATGAAGAGATTCCTGAAGGGCTTCCGGACGTGGT
TGCTTCATTTTTAAACCAGTCGATGAAACAGGAAAGACTCTATAACAAAACGATCTACCAAAAAAAGATATACAAAATGA
CAGAGCTGTTCCATTCACTGCTTGATCAGACAGATGTGCTGAAGCAGCTTTTAGAAAGCTTGACAAGCACATTTTCTCTT
TTTGAGTTTTCTTTATTTATATCGCACGATCAAGACCAATGTTTAGGGATTCCTGCAAAAGAGCTGTATATGGAAGGGGA
AAAATCCGATTCCTTTGCGCTCAAAGTGTATTTGTCCGGAGACATTTTGCGGAAAAATGAATCTGTCGCCTATATTCCGA
TCAAAGGACAGCAGGGCACATACGGGGTGTTGAAGGCTGAAGGAACGGGTGACAGCTTTCTTACTGATGCCTGCCTTGAT
GAAATGTCGCTGTTAGCAAACGCCGCGGGAAAAGCGTTTGAAAATGCCCAGCTCTACGAACAATCCAAAGCAAGCATCGC
AAATTTGGAATTGATTAATGAAACATCACGACGCCTGAATCAGCGGCTGACATTGACTGATACAATGAATGATCTGGCTG
TGAGAATGGCAGAATCGTTTCAGGCAGAAGAAGTGGGATTTTTTCATATAGACCATTTTGAAAACCTAACATTGCTCCCA
GGCAGCACAGCATTTTTTAAAGAAGCGAAGCCGTCAGATTTTTATAATGAGCTGAAAGAAAAGCTGTATGAAGGTGAAAA
AGGGGTTTTCATCGGGAATGGCCAGTCTGTTTTTGGGAAGGCGGGGTACGGCTCGCTGATGGCTGCTCCGATGATTCAAA
ACGACCGGCTTTTAGGCTTTGCGGTTTTATTGAAACAGGAGCTGTACGCTTTTACATTTGAAATGTACAAGCTGTTTCAG
GCGCTGATTCATCACGCGACACTGGCTGTAACCAATTCAATGCTTCGCGACCGCCTTGAGCATCTCGTGAAAACAGATCA
GCTGACTGAACTGTATTCACGAGCGTATTTAGATGAAAAAATTCAATACAGCATGAAAATCCATCAAAAGGGTGTTTTTA
TTCTTGTTGATATTGATAATTTTAAAAATGTAAATGATACGTACGGCCATCAGACTGGGGACGAGATTTTAATTCAAGTC
GCTTCAGTGATTAAAAGCAACATCCGAAAGCATGATGTCGGTGCCCGCTGGGGAGGAGAGGAGCTGGCGATTTATTTGCC
AAATGTGCCGGTTGCAGTGGGGAAACGGATTACCGAGCGACTGGTTTACGCGGTCAGAAAAAATACGAAACCCGAGGTAA
CCATTTCCTGCGGTATCTCCTGCTGGACGACAGAAACAAAAAAGTCGCTGAAAGAGCTTGTGCATGAGGCAGATGAAGCG
CTCTACAGCGCGAAACGGAGCGGGAAAAACCGCTTGATGATTCATGACTCAATAAAATAA

Upstream 100 bases:

>100_bases
ATAATTTATTTGTTTTGAAGTCAACCATTCCTCCATTATTGCTTCACCGTTTATGATATAATAAACAAAAATTAGTGGTA
AACTTTTAGGTGATAAAAAC

Downstream 100 bases:

>100_bases
AAAAAGCCCAAAACGATATCAGTTTTGGGCTTTTATATTACTGCGCTAACGCTTTTTCTAGCGTTTCGGCAAATTGAGTT
AAGTATTTTTCATCAATTTC

Product: diguanylate cyclase-related enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MVEQTKDQLSAFHYHMLDFLLTKSEKVTFTDSFIWLTSAIQTYFSTLCVSLTPSPSDFVTKLADGEARFSASKINASCYL
IEDGSGRRFHLACRQDEEIPEGLPDVVASFLNQSMKQERLYNKTIYQKKIYKMTELFHSLLDQTDVLKQLLESLTSTFSL
FEFSLFISHDQDQCLGIPAKELYMEGEKSDSFALKVYLSGDILRKNESVAYIPIKGQQGTYGVLKAEGTGDSFLTDACLD
EMSLLANAAGKAFENAQLYEQSKASIANLELINETSRRLNQRLTLTDTMNDLAVRMAESFQAEEVGFFHIDHFENLTLLP
GSTAFFKEAKPSDFYNELKEKLYEGEKGVFIGNGQSVFGKAGYGSLMAAPMIQNDRLLGFAVLLKQELYAFTFEMYKLFQ
ALIHHATLAVTNSMLRDRLEHLVKTDQLTELYSRAYLDEKIQYSMKIHQKGVFILVDIDNFKNVNDTYGHQTGDEILIQV
ASVIKSNIRKHDVGARWGGEELAIYLPNVPVAVGKRITERLVYAVRKNTKPEVTISCGISCWTTETKKSLKELVHEADEA
LYSAKRSGKNRLMIHDSIK

Sequences:

>Translated_579_residues
MVEQTKDQLSAFHYHMLDFLLTKSEKVTFTDSFIWLTSAIQTYFSTLCVSLTPSPSDFVTKLADGEARFSASKINASCYL
IEDGSGRRFHLACRQDEEIPEGLPDVVASFLNQSMKQERLYNKTIYQKKIYKMTELFHSLLDQTDVLKQLLESLTSTFSL
FEFSLFISHDQDQCLGIPAKELYMEGEKSDSFALKVYLSGDILRKNESVAYIPIKGQQGTYGVLKAEGTGDSFLTDACLD
EMSLLANAAGKAFENAQLYEQSKASIANLELINETSRRLNQRLTLTDTMNDLAVRMAESFQAEEVGFFHIDHFENLTLLP
GSTAFFKEAKPSDFYNELKEKLYEGEKGVFIGNGQSVFGKAGYGSLMAAPMIQNDRLLGFAVLLKQELYAFTFEMYKLFQ
ALIHHATLAVTNSMLRDRLEHLVKTDQLTELYSRAYLDEKIQYSMKIHQKGVFILVDIDNFKNVNDTYGHQTGDEILIQV
ASVIKSNIRKHDVGARWGGEELAIYLPNVPVAVGKRITERLVYAVRKNTKPEVTISCGISCWTTETKKSLKELVHEADEA
LYSAKRSGKNRLMIHDSIK
>Mature_579_residues
MVEQTKDQLSAFHYHMLDFLLTKSEKVTFTDSFIWLTSAIQTYFSTLCVSLTPSPSDFVTKLADGEARFSASKINASCYL
IEDGSGRRFHLACRQDEEIPEGLPDVVASFLNQSMKQERLYNKTIYQKKIYKMTELFHSLLDQTDVLKQLLESLTSTFSL
FEFSLFISHDQDQCLGIPAKELYMEGEKSDSFALKVYLSGDILRKNESVAYIPIKGQQGTYGVLKAEGTGDSFLTDACLD
EMSLLANAAGKAFENAQLYEQSKASIANLELINETSRRLNQRLTLTDTMNDLAVRMAESFQAEEVGFFHIDHFENLTLLP
GSTAFFKEAKPSDFYNELKEKLYEGEKGVFIGNGQSVFGKAGYGSLMAAPMIQNDRLLGFAVLLKQELYAFTFEMYKLFQ
ALIHHATLAVTNSMLRDRLEHLVKTDQLTELYSRAYLDEKIQYSMKIHQKGVFILVDIDNFKNVNDTYGHQTGDEILIQV
ASVIKSNIRKHDVGARWGGEELAIYLPNVPVAVGKRITERLVYAVRKNTKPEVTISCGISCWTTETKKSLKELVHEADEA
LYSAKRSGKNRLMIHDSIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain

Homologues:

Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=35.0515463917526, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=33.1428571428571, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=33.5294117647059, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788085, Length=206, Percent_Identity=30.0970873786408, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=30.6818181818182, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=32.4022346368715, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=30.1204819277108, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=204, Percent_Identity=31.3725490196078, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=32.9032258064516, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=32.7044025157233, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=31.3253012048193, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=32.4675324675325, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTRP_BACSU (O34325)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   F70000
- RefSeq:   NP_390843.1
- ProteinModelPortal:   O34325
- SMR:   O34325
- EnsemblBacteria:   EBBACT00000001249
- GeneID:   936255
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU29650
- NMPDR:   fig|224308.1.peg.2968
- GenoList:   BSU29650
- GeneTree:   EBGT00070000031763
- HOGENOM:   HBG338224
- OMA:   FEMFKLL
- ProtClustDB:   CLSK2752481
- BioCyc:   BSUB:BSU29650-MONOMER
- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018
- SMART:   SM00065
- SMART:   SM00267
- TIGRFAMs:   TIGR00254

Pfam domain/function: PF00990 GGDEF; SSF55073 A/G_cyclase

EC number: NA

Molecular weight: Translated: 65477; Mature: 65477

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEQTKDQLSAFHYHMLDFLLTKSEKVTFTDSFIWLTSAIQTYFSTLCVSLTPSPSDFVT
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHEEECCCCCHHHHH
KLADGEARFSASKINASCYLIEDGSGRRFHLACRQDEEIPEGLPDVVASFLNQSMKQERL
HHCCCCHHEEHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YNKTIYQKKIYKMTELFHSLLDQTDVLKQLLESLTSTFSLFEFSLFISHDQDQCLGIPAK
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHCCCCHH
ELYMEGEKSDSFALKVYLSGDILRKNESVAYIPIKGQQGTYGVLKAEGTGDSFLTDACLD
HHHCCCCCCCCEEEEEEEECCEEECCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHH
EMSLLANAAGKAFENAQLYEQSKASIANLELINETSRRLNQRLTLTDTMNDLAVRMAESF
HHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHC
QAEEVGFFHIDHFENLTLLPGSTAFFKEAKPSDFYNELKEKLYEGEKGVFIGNGQSVFGK
CHHHCCEEEEECCCCEEECCCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCC
AGYGSLMAAPMIQNDRLLGFAVLLKQELYAFTFEMYKLFQALIHHATLAVTNSMLRDRLE
CCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLVKTDQLTELYSRAYLDEKIQYSMKIHQKGVFILVDIDNFKNVNDTYGHQTGDEILIQV
HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHH
ASVIKSNIRKHDVGARWGGEELAIYLPNVPVAVGKRITERLVYAVRKNTKPEVTISCGIS
HHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCE
CWTTETKKSLKELVHEADEALYSAKRSGKNRLMIHDSIK
EECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
>Mature Secondary Structure
MVEQTKDQLSAFHYHMLDFLLTKSEKVTFTDSFIWLTSAIQTYFSTLCVSLTPSPSDFVT
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHEEECCCCCHHHHH
KLADGEARFSASKINASCYLIEDGSGRRFHLACRQDEEIPEGLPDVVASFLNQSMKQERL
HHCCCCHHEEHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YNKTIYQKKIYKMTELFHSLLDQTDVLKQLLESLTSTFSLFEFSLFISHDQDQCLGIPAK
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHCCCCHH
ELYMEGEKSDSFALKVYLSGDILRKNESVAYIPIKGQQGTYGVLKAEGTGDSFLTDACLD
HHHCCCCCCCCEEEEEEEECCEEECCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHH
EMSLLANAAGKAFENAQLYEQSKASIANLELINETSRRLNQRLTLTDTMNDLAVRMAESF
HHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHC
QAEEVGFFHIDHFENLTLLPGSTAFFKEAKPSDFYNELKEKLYEGEKGVFIGNGQSVFGK
CHHHCCEEEEECCCCEEECCCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCC
AGYGSLMAAPMIQNDRLLGFAVLLKQELYAFTFEMYKLFQALIHHATLAVTNSMLRDRLE
CCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLVKTDQLTELYSRAYLDEKIQYSMKIHQKGVFILVDIDNFKNVNDTYGHQTGDEILIQV
HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHH
ASVIKSNIRKHDVGARWGGEELAIYLPNVPVAVGKRITERLVYAVRKNTKPEVTISCGIS
HHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCE
CWTTETKKSLKELVHEADEALYSAKRSGKNRLMIHDSIK
EECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377