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The map label for this gene is yttP

Identifier: 16080015

GI number: 16080015

Start: 3032417

End: 3033040

Strand: Reverse

Name: yttP

Synonym: BSU29630

Alternate gene names: 16080015

Gene position: 3033040-3032417 (Counterclockwise)

Preceding gene: 16080017

Following gene: 16080013

Centisome position: 71.95

GC content: 39.9

Gene sequence:

>624_bases
ATGAAAGTAAGCACCAAAGACAAAATTATTGAATCTGCTGTCATGCTTTTTAACCAAAAAGGATTTTCTGGCACGTCTGT
CCGTGAAATCGCAAAGTCAGCTGATGTAAATGTTGCGCACATCTCCTACTATTTTAAAGGCAAAGGAGGCTTGATGGAAC
ACTTAGTTTCAGAGTTTTACGAAGGCTACAGCAAAACGCTTGAAACAGCGGCAAGCAATATCTCTACTCAAAGCACGCAG
GAACAGCTTCTTCAATTGGTTTTCGATATTTTATCCTATCAGCATAATCATCGTCAATTAACTCGTTTTGTCTACCGGGA
AGTCACAATTGACTCCACATTAATCAGGGAAATTATGTCGACATATCTAATGAAGGAAAAGTATATCTTCCAGCTGATCA
TTGAGGAAGGAGAAAAACAGCGTGAATATTTAACGCTGCCGCTGCCTCATTTTATTCTCCAATTAAAATCTCTCTTGATG
ATGCCCTATCTCCAGCCTCAATATATTTCAGAAGTACTCTACATGCAGCCGCACGAGCCGTATTTTTATAAAATGTATTT
TGAAGAAATCAAGATTTGGATCAGAAGCGTCTTCCGGACAGGAGACGTGGCGCTCACCAACTAG

Upstream 100 bases:

>100_bases
TAAAACAAAGTTCCGGCTTTTCTGCCGGCATTTGTCGATAAGTTCTTACAGGAACAGCGGCTTTCTGCTTGAATAGTATC
AAGAGGAAGGAGTGAGCCGT

Downstream 100 bases:

>100_bases
CACCGTTCCAAAAACGCCTCATACGCATATCCGACATCTCCCGCTTGATGGGCATCAGACCCAAACACAAGCGGGATCTT
CTTTTGCTTCGCTTCATTCA

Product: transcriptional regulator

Products: NA

Alternate protein names: Stress response protein yttP

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKVSTKDKIIESAVMLFNQKGFSGTSVREIAKSADVNVAHISYYFKGKGGLMEHLVSEFYEGYSKTLETAASNISTQSTQ
EQLLQLVFDILSYQHNHRQLTRFVYREVTIDSTLIREIMSTYLMKEKYIFQLIIEEGEKQREYLTLPLPHFILQLKSLLM
MPYLQPQYISEVLYMQPHEPYFYKMYFEEIKIWIRSVFRTGDVALTN

Sequences:

>Translated_207_residues
MKVSTKDKIIESAVMLFNQKGFSGTSVREIAKSADVNVAHISYYFKGKGGLMEHLVSEFYEGYSKTLETAASNISTQSTQ
EQLLQLVFDILSYQHNHRQLTRFVYREVTIDSTLIREIMSTYLMKEKYIFQLIIEEGEKQREYLTLPLPHFILQLKSLLM
MPYLQPQYISEVLYMQPHEPYFYKMYFEEIKIWIRSVFRTGDVALTN
>Mature_207_residues
MKVSTKDKIIESAVMLFNQKGFSGTSVREIAKSADVNVAHISYYFKGKGGLMEHLVSEFYEGYSKTLETAASNISTQSTQ
EQLLQLVFDILSYQHNHRQLTRFVYREVTIDSTLIREIMSTYLMKEKYIFQLIIEEGEKQREYLTLPLPHFILQLKSLLM
MPYLQPQYISEVLYMQPHEPYFYKMYFEEIKIWIRSVFRTGDVALTN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTTP_BACSU (O34970)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   H70001
- RefSeq:   NP_390841.1
- ProteinModelPortal:   O34970
- SMR:   O34970
- EnsemblBacteria:   EBBACT00000000338
- GeneID:   937327
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU29630
- NMPDR:   fig|224308.1.peg.2966
- GenoList:   BSU29630
- GeneTree:   EBGT00050000000419
- HOGENOM:   HBG338223
- OMA:   NVANISY
- ProtClustDB:   CLSK873540
- BioCyc:   BSUB:BSU29630-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 24389; Mature: 24389

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSTKDKIIESAVMLFNQKGFSGTSVREIAKSADVNVAHISYYFKGKGGLMEHLVSEFY
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHH
EGYSKTLETAASNISTQSTQEQLLQLVFDILSYQHNHRQLTRFVYREVTIDSTLIREIMS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TYLMKEKYIFQLIIEEGEKQREYLTLPLPHFILQLKSLLMMPYLQPQYISEVLYMQPHEP
HHHHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
YFYKMYFEEIKIWIRSVFRTGDVALTN
HHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MKVSTKDKIIESAVMLFNQKGFSGTSVREIAKSADVNVAHISYYFKGKGGLMEHLVSEFY
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHH
EGYSKTLETAASNISTQSTQEQLLQLVFDILSYQHNHRQLTRFVYREVTIDSTLIREIMS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TYLMKEKYIFQLIIEEGEKQREYLTLPLPHFILQLKSLLMMPYLQPQYISEVLYMQPHEP
HHHHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
YFYKMYFEEIKIWIRSVFRTGDVALTN
HHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 11988534