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The map label for this gene is ytcD

Identifier: 16079955

GI number: 16079955

Start: 2968260

End: 2968640

Strand: Reverse

Name: ytcD

Synonym: BSU29030

Alternate gene names: 16079955

Gene position: 2968640-2968260 (Counterclockwise)

Preceding gene: 16079958

Following gene: 16079954

Centisome position: 70.42

GC content: 42.52

Gene sequence:

>381_bases
ATGGAGAAGAAAAAATATAACATTTCTGTTGAAGCGACTCTTGAAGTGATCGGTGGGAAATGGAAATGCGTCATTTTATG
CCATCTGACGCACGGAAAAAAACGCACAAGTGAATTAAAACGCCTAATGCCCAATATCACGCAAAAAATGCTGACTCAGC
AGCTGCGCGAGCTGGAAGCGGACGGTGTCATTAACCGAATCGTATATAATCAAGTTCCTCCCAAAGTGGAATACGAGCTC
AGCGAATACGGCCGCAGCTTAGAAGGGATTTTAGATATGCTGTGTGCTTGGGGAGCGAATCATATTAACAGAGTGTACGG
GGATACATTTTCTGTGCTAGAAGAAAGTGTGCTCAATGATAAGTTAAAACAGGAATCATAA

Upstream 100 bases:

>100_bases
AGCCGGCAAATGTGATTATGAAACATATCGTTAAGAAATAAAAGTACGTACTTTGAAGTGCTATAGTCACTTTTTGGTGC
CTGTGAGGAGAATGGATTGT

Downstream 100 bases:

>100_bases
AGCATGAGGGCAGTCAGTGCGGAGCGCTGGCTGCTTTTTGGTTCTTACGCCTGATATTCTGTGCAAGAAAACATAAGATG
CATCATAAATTAGCGTTATA

Product: MarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MEKKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYEL
SEYGRSLEGILDMLCAWGANHINRVYGDTFSVLEESVLNDKLKQES

Sequences:

>Translated_126_residues
MEKKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYEL
SEYGRSLEGILDMLCAWGANHINRVYGDTFSVLEESVLNDKLKQES
>Mature_126_residues
MEKKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYEL
SEYGRSLEGILDMLCAWGANHINRVYGDTFSVLEESVLNDKLKQES

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082391, Length=85, Percent_Identity=38.8235294117647, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTCD_BACSU (O34533)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   B69989
- RefSeq:   NP_390781.1
- PDB:   2HZT
- PDBsum:   2HZT
- ProteinModelPortal:   O34533
- SMR:   O34533
- EnsemblBacteria:   EBBACT00000003092
- GeneID:   936607
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU29030
- NMPDR:   fig|224308.1.peg.2906
- GenoList:   BSU29030
- GeneTree:   EBGT00070000031789
- HOGENOM:   HBG752497
- OMA:   LIGHKWK
- PhylomeDB:   O34533
- ProtClustDB:   CLSK887703
- BioCyc:   BSUB:BSU29030-MONOMER
- GO:   GO:0006350
- InterPro:   IPR002577
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF01638 DUF24

EC number: NA

Molecular weight: Translated: 14495; Mature: 14495

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEA
CCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLCAWGANHINRVYGDTFSVLEESVLND
HHHHHHHHHHCCCCCCEECHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KLKQES
HHHCCC
>Mature Secondary Structure
MEKKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEA
CCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLCAWGANHINRVYGDTFSVLEESVLND
HHHHHHHHHHCCCCCCEECHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KLKQES
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377