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The map label for this gene is sdhC

Identifier: 16079897

GI number: 16079897

Start: 2908129

End: 2908737

Strand: Reverse

Name: sdhC

Synonym: BSU28450

Alternate gene names: 16079897

Gene position: 2908737-2908129 (Counterclockwise)

Preceding gene: 16079899

Following gene: 255767656

Centisome position: 69.0

GC content: 43.19

Gene sequence:

>609_bases
ATGTCTGGGAACAGAGAGTTTTATTTTCGAAGATTGCATTCCTTGCTTGGCGTCATACCGGTCGGCATCTTTCTTATTCA
GCATTTAGTCGTCAACCAGTTTGCCGCAAGGGGCGCTGAAGCATTCAATAGCGCTGCTCATTTTATGGATAGCCTGCCTT
TCAGGTATGCCTTGGAAATTTTTATTATCTTCTTACCATTAATTTATCATGCAGTTTATGGTGTGTACATAGCGTTTACT
GCGAAAAATAACGCCGGTCAATACAGCTACATGAGAAACTGGCTATTCGTCCTGCAGCGTGTAACCGGTATCATCACCCT
CATTTTCGTCAGCTGGCACGTGTGGGAAACCCGCATTGCCGCACAAATGGGTGCTGAGGTCAATTTCGACATGATGGCGA
ATATTTTGAGCTCTCCGGCTATGCTTGGTTTTTACATTGTCGGTGTTTTATCAACAATTTTCCACTTCTCGAACGGTTTA
TGGTCTTTCGCTGTTACATGGGGCATCACGGTAACGCCTCGTTCTCAAAGAATTTCGACATACGTTACGCTGATTATTTT
TGTTGCACTGTCATACGTAGGCTTAAAAGCGATTTTTGCATTTGTTTAA

Upstream 100 bases:

>100_bases
AAATGAAATTGTCAATAAATCTTAATAAAGTGCTTACAATTGAAAGAAGTGGGGGAAGAGATTTAGCACATTTCGCACTT
ATCAAACAGGGGGTAAAGTA

Downstream 100 bases:

>100_bases
GAGTACTAGATTACTAGAGGGAGAGGGGCTATCATGAGTCAATCAAGCATTATCGTAGTCGGCGGGGGTCTTGCCGGCCT
CATGGCGACAATTAAAGCAG

Product: succinate dehydrogenase (cytochrome b558 subunit)

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-558

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MSGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGAEAFNSAAHFMDSLPFRYALEIFIIFLPLIYHAVYGVYIAFT
AKNNAGQYSYMRNWLFVLQRVTGIITLIFVSWHVWETRIAAQMGAEVNFDMMANILSSPAMLGFYIVGVLSTIFHFSNGL
WSFAVTWGITVTPRSQRISTYVTLIIFVALSYVGLKAIFAFV

Sequences:

>Translated_202_residues
MSGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGAEAFNSAAHFMDSLPFRYALEIFIIFLPLIYHAVYGVYIAFT
AKNNAGQYSYMRNWLFVLQRVTGIITLIFVSWHVWETRIAAQMGAEVNFDMMANILSSPAMLGFYIVGVLSTIFHFSNGL
WSFAVTWGITVTPRSQRISTYVTLIIFVALSYVGLKAIFAFV
>Mature_201_residues
SGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGAEAFNSAAHFMDSLPFRYALEIFIIFLPLIYHAVYGVYIAFTA
KNNAGQYSYMRNWLFVLQRVTGIITLIFVSWHVWETRIAAQMGAEVNFDMMANILSSPAMLGFYIVGVLSTIFHFSNGLW
SFAVTWGITVTPRSQRISTYVTLIIFVALSYVGLKAIFAFV

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DHSC_BACSU (P08064)

Other databases:

- EMBL:   M13470
- EMBL:   Z75208
- EMBL:   AL009126
- EMBL:   M16753
- PIR:   A29843
- RefSeq:   NP_390723.1
- ProteinModelPortal:   P08064
- EnsemblBacteria:   EBBACT00000002924
- GeneID:   937458
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28450
- NMPDR:   fig|224308.1.peg.2848
- GenoList:   BSU28450
- GeneTree:   EBGT00050000002479
- HOGENOM:   HBG290942
- OMA:   FHFSNGL
- ProtClustDB:   CLSK873502
- BioCyc:   BSUB:BSU28450-MONOMER
- GO:   GO:0006810
- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701
- PIRSF:   PIRSF000170
- TIGRFAMs:   TIGR02046

Pfam domain/function: PF01127 Sdh_cyt

EC number: 1.3.99.1

Molecular weight: Translated: 22931; Mature: 22800

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x112e6c68)-; HASH(0x11032b64)-; HASH(0x1087e284)-; HASH(0x1147d28c)-; HASH(0x1169f39c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGAEAFNSAAHFMDSLPFRYALEI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FIIFLPLIYHAVYGVYIAFTAKNNAGQYSYMRNWLFVLQRVTGIITLIFVSWHVWETRIA
HHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMGAEVNFDMMANILSSPAMLGFYIVGVLSTIFHFSNGLWSFAVTWGITVTPRSQRIST
HHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEECCCHHHHHH
YVTLIIFVALSYVGLKAIFAFV
HHHHHHHHHHHHHHHHHHHHHH
>Mature Secondary Structure 
SGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGAEAFNSAAHFMDSLPFRYALEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FIIFLPLIYHAVYGVYIAFTAKNNAGQYSYMRNWLFVLQRVTGIITLIFVSWHVWETRIA
HHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMGAEVNFDMMANILSSPAMLGFYIVGVLSTIFHFSNGLWSFAVTWGITVTPRSQRIST
HHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEECCCHHHHHH
YVTLIIFVALSYVGLKAIFAFV
HHHHHHHHHHHHHHHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540