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The map label for this gene is yrdP

Identifier: 16079717

GI number: 16079717

Start: 2722767

End: 2723804

Strand: Reverse

Name: yrdP

Synonym: BSU26640

Alternate gene names: 16079717

Gene position: 2723804-2722767 (Counterclockwise)

Preceding gene: 16079718

Following gene: 16079715

Centisome position: 64.61

GC content: 33.82

Gene sequence:

>1038_bases
GTGTACGACACTATAGTAATCGGGGCTGGTCAAGCAGGGATCTCAATAGGATATTATCTTAAGCAGTCCGATCAAAAGTT
TATCATTTTGGATAAAAGTCATGAGGTGGGGGAGAGCTGGAAAGATCGGTATGACTCATTAGTTTTATTTACTTCTCGAA
TGTATAGCTCTTTGCCTGGAATGCATCTTGAAGGAGAAAAACATGGATTTCCTTCAAAAAATGAAATTGTTGCTTATCTA
AAGAAGTATGTTAAAAAATTTGAAATTCCAATCCAATTACGGACAGAAGTAATAAGTGTCCTAAAAATAAAGAATTATTT
CTTAATAAAAACAAATCGGGAAGAATATCAAACGAAGAATCTTGTCATTGCTACAGGGCCTTTTCATACCCCTAATATTC
CATCAATATCAAAGGATTTATCCGATAATATTAATCAACTACACTCATCACAATATAAGAATTCAAAACAATTGGCATAT
GGAAATGTACTAGTAGTTGGTGGTGGGAATAGTGGTGCTCAAATAGCTGTTGAATTATCCAAAGAAAGAGTTACATATTT
AGCTTGTAGTAATAAACTTGTTTATTTCCCTTTAATGATCGGAAAAAGAAGCATCTTTTGGTGGTTTGATAAACTAGGAG
TTTTACATGCAAGTCATACATCAATAGTAGGCAAATTCATTCAAAAGAAAGGTGATCCAGTATTTGGGCATGAATTAAAA
CATGCAATAAAACAGAAGGAGATCATCTTAAAAAAAAGAGTCATTGCCGCAAAGCAAAATGAAATCATTTTTAAAGATTC
ATCTACATTAGAAGTAAACAATATTATTTGGGCTACTGGTTTCAGGAATCCCTTATGTTGGATAAATATAAAAGGTGTTT
TGGATCAAGAAGGTCGAATCATACATCATAGAGGTGTTTCACCTGTAGAAGGATTGTACTTTATAGGTTTGCCTTGGCAG
CATAAGCGAGGTTCAGCGTTGCTTCAAGGCGTAGGAAATGATGCTGAATACATTGTAAAACAAATGAACGGTGAATAA

Upstream 100 bases:

>100_bases
CCATCACCATTAAATTTTTTATCTAACTTTATAGTGAGGAGATCAACTAGGATTTTGCAGATTCTGTCTACTGACAATTT
GAAATTGGCGGGGTGATAAT

Downstream 100 bases:

>100_bases
ACGAAGCAGAGCAGTAACTCACATGTTTACTGCTCTATTTTTTGCGTGAATAAGGGTAGCGAAGTGGAGATGAGCCTTCT
CTTTTATTTAAGAAGTTAGA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MYDTIVIGAGQAGISIGYYLKQSDQKFIILDKSHEVGESWKDRYDSLVLFTSRMYSSLPGMHLEGEKHGFPSKNEIVAYL
KKYVKKFEIPIQLRTEVISVLKIKNYFLIKTNREEYQTKNLVIATGPFHTPNIPSISKDLSDNINQLHSSQYKNSKQLAY
GNVLVVGGGNSGAQIAVELSKERVTYLACSNKLVYFPLMIGKRSIFWWFDKLGVLHASHTSIVGKFIQKKGDPVFGHELK
HAIKQKEIILKKRVIAAKQNEIIFKDSSTLEVNNIIWATGFRNPLCWINIKGVLDQEGRIIHHRGVSPVEGLYFIGLPWQ
HKRGSALLQGVGNDAEYIVKQMNGE

Sequences:

>Translated_345_residues
MYDTIVIGAGQAGISIGYYLKQSDQKFIILDKSHEVGESWKDRYDSLVLFTSRMYSSLPGMHLEGEKHGFPSKNEIVAYL
KKYVKKFEIPIQLRTEVISVLKIKNYFLIKTNREEYQTKNLVIATGPFHTPNIPSISKDLSDNINQLHSSQYKNSKQLAY
GNVLVVGGGNSGAQIAVELSKERVTYLACSNKLVYFPLMIGKRSIFWWFDKLGVLHASHTSIVGKFIQKKGDPVFGHELK
HAIKQKEIILKKRVIAAKQNEIIFKDSSTLEVNNIIWATGFRNPLCWINIKGVLDQEGRIIHHRGVSPVEGLYFIGLPWQ
HKRGSALLQGVGNDAEYIVKQMNGE
>Mature_345_residues
MYDTIVIGAGQAGISIGYYLKQSDQKFIILDKSHEVGESWKDRYDSLVLFTSRMYSSLPGMHLEGEKHGFPSKNEIVAYL
KKYVKKFEIPIQLRTEVISVLKIKNYFLIKTNREEYQTKNLVIATGPFHTPNIPSISKDLSDNINQLHSSQYKNSKQLAY
GNVLVVGGGNSGAQIAVELSKERVTYLACSNKLVYFPLMIGKRSIFWWFDKLGVLHASHTSIVGKFIQKKGDPVFGHELK
HAIKQKEIILKKRVIAAKQNEIIFKDSSTLEVNNIIWATGFRNPLCWINIKGVLDQEGRIIHHRGVSPVEGLYFIGLPWQ
HKRGSALLQGVGNDAEYIVKQMNGE

Specific function: Involved in potassium and divalent cation transport. Enhances the transport activity of the cation/potassium transporter CzcD

COG id: COG2072

COG function: function code P; Predicted flavoprotein involved in K+ transport

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17555726, Length=330, Percent_Identity=25.1515151515152, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CZCO_BACSU (O07085)

Other databases:

- EMBL:   U62055
- EMBL:   U93876
- EMBL:   AL009126
- PIR:   E69725
- RefSeq:   NP_390541.1
- ProteinModelPortal:   O07085
- SMR:   O07085
- EnsemblBacteria:   EBBACT00000002954
- GeneID:   937340
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26640
- NMPDR:   fig|224308.1.peg.2666
- GenoList:   BSU26640
- GeneTree:   EBGT00050000000436
- HOGENOM:   HBG700572
- OMA:   SHRTTIC
- ProtClustDB:   CLSK873674
- BioCyc:   BSUB:BSU26640-MONOMER
- InterPro:   IPR013027
- InterPro:   IPR000103
- PRINTS:   PR00368
- PRINTS:   PR00469

Pfam domain/function: PF07992 Pyr_redox_2

EC number: NA

Molecular weight: Translated: 39066; Mature: 39066

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDTIVIGAGQAGISIGYYLKQSDQKFIILDKSHEVGESWKDRYDSLVLFTSRMYSSLPG
CCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHEEEEHHHHHHHCCC
MHLEGEKHGFPSKNEIVAYLKKYVKKFEIPIQLRTEVISVLKIKNYFLIKTNREEYQTKN
CEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHEECCEEEEEECHHHHCCCC
LVIATGPFHTPNIPSISKDLSDNINQLHSSQYKNSKQLAYGNVLVVGGGNSGAQIAVELS
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEECCCCCCEEEEEEC
KERVTYLACSNKLVYFPLMIGKRSIFWWFDKLGVLHASHTSIVGKFIQKKGDPVFGHELK
CCEEEEEEECCCEEEEEEEECCCEEEEEEHHHCEEECCHHHHHHHHHHHCCCCCCHHHHH
HAIKQKEIILKKRVIAAKQNEIIFKDSSTLEVNNIIWATGFRNPLCWINIKGVLDQEGRI
HHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCEEEECCCCCCEEEEEEEEEECCCCCE
IHHRGVSPVEGLYFIGLPWQHKRGSALLQGVGNDAEYIVKQMNGE
EEECCCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MYDTIVIGAGQAGISIGYYLKQSDQKFIILDKSHEVGESWKDRYDSLVLFTSRMYSSLPG
CCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHEEEEHHHHHHHCCC
MHLEGEKHGFPSKNEIVAYLKKYVKKFEIPIQLRTEVISVLKIKNYFLIKTNREEYQTKN
CEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHEECCEEEEEECHHHHCCCC
LVIATGPFHTPNIPSISKDLSDNINQLHSSQYKNSKQLAYGNVLVVGGGNSGAQIAVELS
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEECCCCCCEEEEEEC
KERVTYLACSNKLVYFPLMIGKRSIFWWFDKLGVLHASHTSIVGKFIQKKGDPVFGHELK
CCEEEEEEECCCEEEEEEEECCCEEEEEEHHHCEEECCHHHHHHHHHHHCCCCCCHHHHH
HAIKQKEIILKKRVIAAKQNEIIFKDSSTLEVNNIIWATGFRNPLCWINIKGVLDQEGRI
HHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCEEEECCCCCCEEEEEEEEEECCCCCE
IHHRGVSPVEGLYFIGLPWQHKRGSALLQGVGNDAEYIVKQMNGE
EEECCCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9099864; 9308178; 9384377