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The map label for this gene is yrdR

Identifier: 16079715

GI number: 16079715

Start: 2720687

End: 2721652

Strand: Reverse

Name: yrdR

Synonym: BSU26620

Alternate gene names: 16079715

Gene position: 2721652-2720687 (Counterclockwise)

Preceding gene: 16079717

Following gene: 255767614

Centisome position: 64.56

GC content: 35.09

Gene sequence:

>966_bases
ATGAAAAAAGGTCAATTATTCATTGGTGCCCTTACATGTTTAGTAGCAAGTATGTCTTGGGGCGCGATGTTTCCAGTTGC
AGATCATGCATTAGAATTTGTTGATCCGTTTTATTTTTCATTTATTCGCTACGGTGTGGTAACGATTATGTTAGTGATTT
TATTATTGGTGAGAGAAGGAAAGAAATCATTTCATTTAGAGGGTAAAGCAAAATGGATCATTTTATTTGGGGTGATGGCG
TTTACTATATACAATGTTCTTATTTTTTTAGGTCAAAGGTTGATGGGGAAGTCTGGAATTATGACAGCATCCATTGCCGA
GGCACTCATGCCGATGCTTTCAATTGTTATTCTATGGGGATATAAACATGTGAAACCTAAAAAATACACAATGATCAGTA
TATTGATTGCCTTTTTGGGGGCTTCGATGGTCATAACCAAAGGTAATATAAGTTTCTTTTTTTCATTAGGGGATCATCTA
TTCTCGATACTCTTTATATTCATTGGTGTTTTAGGGTGGGTTGTCTACACAATGGGGGGACAGATATTCCGAGAGTGGTC
CACACTTCGTTATTCAACTTTGACATGTTTATTCGGCACAGCTATAACAGGAATCATGACAGCTATACTTACCGCGCAAG
GTTACGTGTCGGTACCGAGTATTAAAGTGATTGCAGCAATTAAGTATGATTTTTTATTTATGATTACTTTACCAGGTATC
ATAGCCCTCCTTAGTTGGAACTATGGCATTAAAATCCTATCATCCATTAATGGGATTTTATTTATTAACTTTGTCCCCAT
TACTACATTGTTAATCATGGTGATCAAAGGATATAACATAACTGCTTTTGATATAGTAGGAACACTGTTTGTCATTATTG
GACTCATTTTAAATAACATATATCAGCGTAAGGAAGATTATAAGCAGGTATTGCAAAAAGAAAAAACAAATTTGACTATC
ACTTAG

Upstream 100 bases:

>100_bases
CATTATCAATGATGTTTTTCATCACTTTTGTTCATTTTACTTGATGCTTACTTCTTTTTATAATTCTCATTGTAATTTTA
AAGAAAAGGAGGGGAATTCA

Downstream 100 bases:

>100_bases
ACAGTGGGGGATTTAAAATGTTTGAAGGTTTATTGTTTTTCATTTCAGCTGGAATTGTCTGTGAACTTGCTGCAATTAAT
AGAAATGGCCGCAAAAATAT

Product: efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKKGQLFIGALTCLVASMSWGAMFPVADHALEFVDPFYFSFIRYGVVTIMLVILLLVREGKKSFHLEGKAKWIILFGVMA
FTIYNVLIFLGQRLMGKSGIMTASIAEALMPMLSIVILWGYKHVKPKKYTMISILIAFLGASMVITKGNISFFFSLGDHL
FSILFIFIGVLGWVVYTMGGQIFREWSTLRYSTLTCLFGTAITGIMTAILTAQGYVSVPSIKVIAAIKYDFLFMITLPGI
IALLSWNYGIKILSSINGILFINFVPITTLLIMVIKGYNITAFDIVGTLFVIIGLILNNIYQRKEDYKQVLQKEKTNLTI
T

Sequences:

>Translated_321_residues
MKKGQLFIGALTCLVASMSWGAMFPVADHALEFVDPFYFSFIRYGVVTIMLVILLLVREGKKSFHLEGKAKWIILFGVMA
FTIYNVLIFLGQRLMGKSGIMTASIAEALMPMLSIVILWGYKHVKPKKYTMISILIAFLGASMVITKGNISFFFSLGDHL
FSILFIFIGVLGWVVYTMGGQIFREWSTLRYSTLTCLFGTAITGIMTAILTAQGYVSVPSIKVIAAIKYDFLFMITLPGI
IALLSWNYGIKILSSINGILFINFVPITTLLIMVIKGYNITAFDIVGTLFVIIGLILNNIYQRKEDYKQVLQKEKTNLTI
T
>Mature_321_residues
MKKGQLFIGALTCLVASMSWGAMFPVADHALEFVDPFYFSFIRYGVVTIMLVILLLVREGKKSFHLEGKAKWIILFGVMA
FTIYNVLIFLGQRLMGKSGIMTASIAEALMPMLSIVILWGYKHVKPKKYTMISILIAFLGASMVITKGNISFFFSLGDHL
FSILFIFIGVLGWVVYTMGGQIFREWSTLRYSTLTCLFGTAITGIMTAILTAQGYVSVPSIKVIAAIKYDFLFMITLPGI
IALLSWNYGIKILSSINGILFINFVPITTLLIMVIKGYNITAFDIVGTLFVIIGLILNNIYQRKEDYKQVLQKEKTNLTI
T

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRDR_BACSU (O07086)

Other databases:

- EMBL:   U93876
- EMBL:   AL009126
- PIR:   G69973
- RefSeq:   NP_390539.1
- ProteinModelPortal:   O07086
- EnsemblBacteria:   EBBACT00000000297
- GeneID:   937629
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26620
- NMPDR:   fig|224308.1.peg.2664
- GenoList:   BSU26620
- GeneTree:   EBGT00050000001296
- HOGENOM:   HBG337357
- OMA:   WSTLRYS
- ProtClustDB:   CLSK887633
- BioCyc:   BSUB:BSU26620-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 35913; Mature: 35913

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x10209dd0)-; HASH(0x1134a0b4)-; HASH(0x113412f0)-; HASH(0xfd8037c)-; HASH(0x113403ac)-; HASH(0x10b57b30)-; HASH(0x1134e188)-; HASH(0x10ef2344)-; HASH(0x104475dc)-; HASH(0x11341344)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGQLFIGALTCLVASMSWGAMFPVADHALEFVDPFYFSFIRYGVVTIMLVILLLVREG
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKSFHLEGKAKWIILFGVMAFTIYNVLIFLGQRLMGKSGIMTASIAEALMPMLSIVILWG
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
YKHVKPKKYTMISILIAFLGASMVITKGNISFFFSLGDHLFSILFIFIGVLGWVVYTMGG
CCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIFREWSTLRYSTLTCLFGTAITGIMTAILTAQGYVSVPSIKVIAAIKYDFLFMITLPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHH
IALLSWNYGIKILSSINGILFINFVPITTLLIMVIKGYNITAFDIVGTLFVIIGLILNNI
HHHHHCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
YQRKEDYKQVLQKEKTNLTIT
HHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure
MKKGQLFIGALTCLVASMSWGAMFPVADHALEFVDPFYFSFIRYGVVTIMLVILLLVREG
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKSFHLEGKAKWIILFGVMAFTIYNVLIFLGQRLMGKSGIMTASIAEALMPMLSIVILWG
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
YKHVKPKKYTMISILIAFLGASMVITKGNISFFFSLGDHLFSILFIFIGVLGWVVYTMGG
CCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIFREWSTLRYSTLTCLFGTAITGIMTAILTAQGYVSVPSIKVIAAIKYDFLFMITLPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHH
IALLSWNYGIKILSSINGILFINFVPITTLLIMVIKGYNITAFDIVGTLFVIIGLILNNI
HHHHHCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
YQRKEDYKQVLQKEKTNLTIT
HHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377