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The map label for this gene is yqcD

Identifier: 16079647

GI number: 16079647

Start: 2667045

End: 2667380

Strand: Reverse

Name: yqcD

Synonym: BSU25940

Alternate gene names: 16079647

Gene position: 2667380-2667045 (Counterclockwise)

Preceding gene: 255767597

Following gene: 16079646

Centisome position: 63.27

GC content: 40.48

Gene sequence:

>336_bases
ATGAATATAGGTGAAGCTATTCTTTTTAAATACCCAACAGCTGATCCCACAAAGGATTTTATTGTCCAGAATAATGGTGA
TGGAACTCCCTCATATATAGCAGAGTGGAATATTAGGGCACCTATACCCACGGAAGCAGAGTTAAAAACTTGGTGGGAAG
AGCTTCAGAGTACATCTGCATATGAACCACCAGTTCAAGTGGATCTACTTGCAAGAGAGTTGTCACAGGAAAAACTGGCT
CGTAAACAGCTTGAAGAATTAAACCAAACTTTGGGAAGCGAGCTTTCAAAAATAAAGTTGCAACTGCTTACTCTACAAGG
AGGGCAAGGTTCATGA

Upstream 100 bases:

>100_bases
AACACTGAAAAGGGCAGTAGATGATAAAAATGGTGTATTTAACTTTTTTGATATACAAGAACTTGGAGGCCGAAACTATC
CAAGATTTTAGGAGGTAACG

Downstream 100 bases:

>100_bases
ATTATTGGGTGCTGGCTTTGCATTATAACTGGGCTTCTTCTGAAATGGTGAAACAGGCAATTCATCTCAAAGATTGTTCG
CCCGAAGATTTACAGGAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MNIGEAILFKYPTADPTKDFIVQNNGDGTPSYIAEWNIRAPIPTEAELKTWWEELQSTSAYEPPVQVDLLARELSQEKLA
RKQLEELNQTLGSELSKIKLQLLTLQGGQGS

Sequences:

>Translated_111_residues
MNIGEAILFKYPTADPTKDFIVQNNGDGTPSYIAEWNIRAPIPTEAELKTWWEELQSTSAYEPPVQVDLLARELSQEKLA
RKQLEELNQTLGSELSKIKLQLLTLQGGQGS
>Mature_111_residues
MNIGEAILFKYPTADPTKDFIVQNNGDGTPSYIAEWNIRAPIPTEAELKTWWEELQSTSAYEPPVQVDLLARELSQEKLA
RKQLEELNQTLGSELSKIKLQLLTLQGGQGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis xkdW

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQCD_BACSU (P45939)

Other databases:

- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   C69949
- RefSeq:   NP_390471.1
- ProteinModelPortal:   P45939
- SMR:   P45939
- EnsemblBacteria:   EBBACT00000000886
- GeneID:   937768
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU25940
- NMPDR:   fig|224308.1.peg.2596
- GenoList:   BSU25940
- GeneTree:   EBGT00050000006618
- HOGENOM:   HBG345190
- ProtClustDB:   CLSK887138
- BioCyc:   BSUB:BSU25940-MONOMER
- InterPro:   IPR019094

Pfam domain/function: PF09636 XkdW

EC number: NA

Molecular weight: Translated: 12444; Mature: 12444

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGEAILFKYPTADPTKDFIVQNNGDGTPSYIAEWNIRAPIPTEAELKTWWEELQSTSA
CCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
YEPPVQVDLLARELSQEKLARKQLEELNQTLGSELSKIKLQLLTLQGGQGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
>Mature Secondary Structure
MNIGEAILFKYPTADPTKDFIVQNNGDGTPSYIAEWNIRAPIPTEAELKTWWEELQSTSA
CCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
YEPPVQVDLLARELSQEKLARKQLEELNQTLGSELSKIKLQLLTLQGGQGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895