Click here to switch to the map view.

The map label for this gene is yqcC

Identifier: 255767597

GI number: 255767597

Start: 2667390

End: 2668490

Strand: Reverse

Name: yqcC

Synonym: BSU25950

Alternate gene names: 255767597

Gene position: 2668490-2667390 (Counterclockwise)

Preceding gene: 16079649

Following gene: 16079647

Centisome position: 63.3

GC content: 38.24

Gene sequence:

>1101_bases
ATGGCTTATGATGCAAAAACAGATTGGCTCCCGGACGATCCGATTAATGAAGATGATGTGAACCGTTGGGAGAAAGGCAT
TCAAGATGCGCATAAAGATTTAGCTGTACATAAAAATGACATGAACAACCCTCACAATACAACAAAGGCGCAAATCGGGC
TAGGGAACGTTGATAATGTACAGCAAGCTTCGAAAAAAGAATTTGAAGAGCATCGTAATGATTTACAACGGCACATTACA
CCAGTGGAACGGGAGAATTGGAATGCAAAAGAAACAATTGTCGGAGCTCAGGAAAAAGCGGATAAGGCTTTATCGGATGC
AAAATATTACGTGGATACCAACTATAAAAATAACAATCTGACGTTAATTACTGGAGACAATGCTATTCAAGATGCAAGAA
CAGGAGGGGAAGAATATCCTTTAGGACTGACCTTAATGGACATTGGGCAGGGAAATACTACAGGCTACCCCTTGGGTTAT
GGCATTGTCAAAAATGAAAAATATAATAATTACCGTTTCACTCAATACTTTTACGGAACAGGGAATGAGTCTGGGACTTA
CTATGACAGTACAGGAGTTTGGATTAGACACTGGTGGAGTGGTTCAGGCTGGACTCCGTGGCAAAAGATATCAGGTTTTG
CTCATGCGAATATTGGAACTACAGGTGTTCAGTATTTAAAAAAGATTGATCACACTAAAATTGCATTTAACAGGGTCATC
AAGGATAGCCATAATGCTTTTGATACTAAAAACAATCGATTTATTGCTCCGAACGATGGAATGTACTTAATCGGGGCAAG
TATATATACCTTAAATTATACATCTTATATAAACTTTCATTTGAAGGTTTACCTAAATGGAAAAGCATATAAAACACTGC
ACCATGTAAGAGGAGACTTTCAGGAAAAGGATAATGGGATGAATCTTGGTTTAAACGGCAATGCGACTGTACCCATGAAT
AAAGGAGATTACGTTGAAATCTGGTGCTACTGTAATTACGGAGGAGACGAAACACTGAAAAGGGCAGTAGATGATAAAAA
TGGTGTATTTAACTTTTTTGATATACAAGAACTTGGAGGCCGAAACTATCCAAGATTTTAG

Upstream 100 bases:

>100_bases
TTGATGATCAAAACAACGTGATTACGGAAAGAACAACAGATTTAGACGTTAGTAATAATAGAACGCTAGATTTTAGGATT
ACTTTTGAGGTGGTTTAACA

Downstream 100 bases:

>100_bases
GAGGTAACGATGAATATAGGTGAAGCTATTCTTTTTAAATACCCAACAGCTGATCCCACAAAGGATTTTATTGTCCAGAA
TAATGGTGATGGAACTCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MAYDAKTDWLPDDPINEDDVNRWEKGIQDAHKDLAVHKNDMNNPHNTTKAQIGLGNVDNVQQASKKEFEEHRNDLQRHIT
PVERENWNAKETIVGAQEKADKALSDAKYYVDTNYKNNNLTLITGDNAIQDARTGGEEYPLGLTLMDIGQGNTTGYPLGY
GIVKNEKYNNYRFTQYFYGTGNESGTYYDSTGVWIRHWWSGSGWTPWQKISGFAHANIGTTGVQYLKKIDHTKIAFNRVI
KDSHNAFDTKNNRFIAPNDGMYLIGASIYTLNYTSYINFHLKVYLNGKAYKTLHHVRGDFQEKDNGMNLGLNGNATVPMN
KGDYVEIWCYCNYGGDETLKRAVDDKNGVFNFFDIQELGGRNYPRF

Sequences:

>Translated_366_residues
MAYDAKTDWLPDDPINEDDVNRWEKGIQDAHKDLAVHKNDMNNPHNTTKAQIGLGNVDNVQQASKKEFEEHRNDLQRHIT
PVERENWNAKETIVGAQEKADKALSDAKYYVDTNYKNNNLTLITGDNAIQDARTGGEEYPLGLTLMDIGQGNTTGYPLGY
GIVKNEKYNNYRFTQYFYGTGNESGTYYDSTGVWIRHWWSGSGWTPWQKISGFAHANIGTTGVQYLKKIDHTKIAFNRVI
KDSHNAFDTKNNRFIAPNDGMYLIGASIYTLNYTSYINFHLKVYLNGKAYKTLHHVRGDFQEKDNGMNLGLNGNATVPMN
KGDYVEIWCYCNYGGDETLKRAVDDKNGVFNFFDIQELGGRNYPRF
>Mature_365_residues
AYDAKTDWLPDDPINEDDVNRWEKGIQDAHKDLAVHKNDMNNPHNTTKAQIGLGNVDNVQQASKKEFEEHRNDLQRHITP
VERENWNAKETIVGAQEKADKALSDAKYYVDTNYKNNNLTLITGDNAIQDARTGGEEYPLGLTLMDIGQGNTTGYPLGYG
IVKNEKYNNYRFTQYFYGTGNESGTYYDSTGVWIRHWWSGSGWTPWQKISGFAHANIGTTGVQYLKKIDHTKIAFNRVIK
DSHNAFDTKNNRFIAPNDGMYLIGASIYTLNYTSYINFHLKVYLNGKAYKTLHHVRGDFQEKDNGMNLGLNGNATVPMNK
GDYVEIWCYCNYGGDETLKRAVDDKNGVFNFFDIQELGGRNYPRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis xkdV

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQCC_BACSU (P45938)

Other databases:

- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   B69949
- RefSeq:   NP_390472.2
- ProteinModelPortal:   P45938
- EnsemblBacteria:   EBBACT00000001888
- GeneID:   937773
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU25950
- NMPDR:   fig|224308.1.peg.2597
- GenoList:   BSU25950
- GeneTree:   EBGT00050000000239
- ProtClustDB:   CLSK887137
- BioCyc:   BSUB:BSU25950-MONOMER
- InterPro:   IPR001073
- InterPro:   IPR008983
- Gene3D:   G3DSA:2.60.120.40

Pfam domain/function: PF00386 C1q; SSF49842 TNF_like

EC number: NA

Molecular weight: Translated: 41772; Mature: 41640

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYDAKTDWLPDDPINEDDVNRWEKGIQDAHKDLAVHKNDMNNPHNTTKAQIGLGNVDNV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECCCCCHH
QQASKKEFEEHRNDLQRHITPVERENWNAKETIVGAQEKADKALSDAKYYVDTNYKNNNL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEECCHHHHHHHHHCCEEEEECCCCCCCE
TLITGDNAIQDARTGGEEYPLGLTLMDIGQGNTTGYPLGYGIVKNEKYNNYRFTQYFYGT
EEEECCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEC
GNESGTYYDSTGVWIRHWWSGSGWTPWQKISGFAHANIGTTGVQYLKKIDHTKIAFNRVI
CCCCCCEECCCCCEEEEEECCCCCCHHHHHCCEEECCCCHHHHHHHHHHCCHHHHHHHHH
KDSHNAFDTKNNRFIAPNDGMYLIGASIYTLNYTSYINFHLKVYLNGKAYKTLHHVRGDF
HCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEEECCCHHHHHHHHHCCC
QEKDNGMNLGLNGNATVPMNKGDYVEIWCYCNYGGDETLKRAVDDKNGVFNFFDIQELGG
HHCCCCEEECCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHCCCCCEEEEEEHHHHCC
RNYPRF
CCCCCC
>Mature Secondary Structure 
AYDAKTDWLPDDPINEDDVNRWEKGIQDAHKDLAVHKNDMNNPHNTTKAQIGLGNVDNV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECCCCCHH
QQASKKEFEEHRNDLQRHITPVERENWNAKETIVGAQEKADKALSDAKYYVDTNYKNNNL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEECCHHHHHHHHHCCEEEEECCCCCCCE
TLITGDNAIQDARTGGEEYPLGLTLMDIGQGNTTGYPLGYGIVKNEKYNNYRFTQYFYGT
EEEECCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEC
GNESGTYYDSTGVWIRHWWSGSGWTPWQKISGFAHANIGTTGVQYLKKIDHTKIAFNRVI
CCCCCCEECCCCCEEEEEECCCCCCHHHHHCCEEECCCCHHHHHHHHHHCCHHHHHHHHH
KDSHNAFDTKNNRFIAPNDGMYLIGASIYTLNYTSYINFHLKVYLNGKAYKTLHHVRGDF
HCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEEECCCHHHHHHHHHCCC
QEKDNGMNLGLNGNATVPMNKGDYVEIWCYCNYGGDETLKRAVDDKNGVFNFFDIQELGG
HHCCCCEEECCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHCCCCCEEEEEEHHHHCC
RNYPRF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895