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The map label for this gene is yqfO

Identifier: 16079572

GI number: 16079572

Start: 2597502

End: 2598623

Strand: Reverse

Name: yqfO

Synonym: BSU25170

Alternate gene names: 16079572

Gene position: 2598623-2597502 (Counterclockwise)

Preceding gene: 16079573

Following gene: 16079569

Centisome position: 61.64

GC content: 43.85

Gene sequence:

>1122_bases
ATGGCTAAAAGTGTAAATGGGCAGCAGATCATCCAGCTGTTTGAACAATTTTCCCCGAAAGCCTATGCGGTTGAAGGAGA
TAAAATCGGCCTGCAAATCGGCACCTTAAACAAACCAATTAAAAATGTGATGGTTACACTTGATGTGTTAGAGAGCGTTA
TCGATGAAGCGATTGAAAAAGAGGTTGACTTGATTATTGCACACCATCCACCAATTTTCCGGTCGCTAAAGCATATTTCA
ACAGATCAGCCTGCCGGAAGGTTAATTGAAAAGTGTTTGAAGCATGATATTGCTGTTTATGCAGCTCATACAAATTTAGA
CGTTGCGGACGGCGGTGTGAATGATTTGCTTGCTGAAGCATTAGAGCTGAGTGAGACGGAAGTGCTGGCACCTACTTATA
CGGATCCTCTGAAAAAGCTGGCAGTTTACGTGCCGAAGGAATATGAAGAGCAGGTCAGAGCCGCGCTCGGAAATGCGGGG
GCCGGCCATATCGGTGAATACAGCCATTGCGCGTTTTCATCTGAAGGAATCGGCAGCTTTAAGCCATTGGACGGAGCTAA
GCCTTTTATCGGTGAAGTGGGAGAGCTTGAGCTTGTTCATGAAGTAAGGCTTGAGACTGTATTTCCTAAAAGCGTCGAAA
AGGCTGTTATCAATGCAATGATAAAAAGCCATCCATATGAAGAAGTCGCTTACGATATCTATCCTGTCGAACAGACTCCC
GCCGAAAAAGGGCTCGGCCGTGTCGGAACCCTTAAAAATGAGATGACGCTCAAGGAATTCGCTTTATTTGTGAAAGACAA
GCTTGACGTCAATGGTGTCAGAATGGTTGGGGATGCTGACAGCATGGTGAAAAAAGTAGCTGTTCTTGGCGGAGATGGAA
ACAAGTATATTCATCATGCAAAACGAAAGGGAGCCGATGTTTACGTCACAGGAGATTTATACTTCCATGTGGCCCATGAT
GCGATGATGCTTGGCCTAAATGTGGTTGATCCGGGCCATTACGCGGAAAAAATCATGAAAGAAGGCGTCACGAGAAAACT
TACATCAATGTGTAATGATAAAAAGTTTGGCGTGAATATCTTTGTTTCTGAAACAGATACAAATCCATTTACATTTCTAT
AA

Upstream 100 bases:

>100_bases
ATTTATGAACAGATCAGCCAAGCGGCGGATACAGAGCAAAACAAACAAAAATTAAAGGAGCTCGCCGATCGAATGGAGCT
GTTAAAGGAGGTAATCGATC

Downstream 100 bases:

>100_bases
AAAAACTGAGGCTTTTACAGCCTCAGTTTTTTGCTTTTACTTTTGGAAGTATTTTTTTGAGCGGTATATTATGTTCAGTT
GTCCAAGTTGATGGATCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MAKSVNGQQIIQLFEQFSPKAYAVEGDKIGLQIGTLNKPIKNVMVTLDVLESVIDEAIEKEVDLIIAHHPPIFRSLKHIS
TDQPAGRLIEKCLKHDIAVYAAHTNLDVADGGVNDLLAEALELSETEVLAPTYTDPLKKLAVYVPKEYEEQVRAALGNAG
AGHIGEYSHCAFSSEGIGSFKPLDGAKPFIGEVGELELVHEVRLETVFPKSVEKAVINAMIKSHPYEEVAYDIYPVEQTP
AEKGLGRVGTLKNEMTLKEFALFVKDKLDVNGVRMVGDADSMVKKVAVLGGDGNKYIHHAKRKGADVYVTGDLYFHVAHD
AMMLGLNVVDPGHYAEKIMKEGVTRKLTSMCNDKKFGVNIFVSETDTNPFTFL

Sequences:

>Translated_373_residues
MAKSVNGQQIIQLFEQFSPKAYAVEGDKIGLQIGTLNKPIKNVMVTLDVLESVIDEAIEKEVDLIIAHHPPIFRSLKHIS
TDQPAGRLIEKCLKHDIAVYAAHTNLDVADGGVNDLLAEALELSETEVLAPTYTDPLKKLAVYVPKEYEEQVRAALGNAG
AGHIGEYSHCAFSSEGIGSFKPLDGAKPFIGEVGELELVHEVRLETVFPKSVEKAVINAMIKSHPYEEVAYDIYPVEQTP
AEKGLGRVGTLKNEMTLKEFALFVKDKLDVNGVRMVGDADSMVKKVAVLGGDGNKYIHHAKRKGADVYVTGDLYFHVAHD
AMMLGLNVVDPGHYAEKIMKEGVTRKLTSMCNDKKFGVNIFVSETDTNPFTFL
>Mature_372_residues
AKSVNGQQIIQLFEQFSPKAYAVEGDKIGLQIGTLNKPIKNVMVTLDVLESVIDEAIEKEVDLIIAHHPPIFRSLKHIST
DQPAGRLIEKCLKHDIAVYAAHTNLDVADGGVNDLLAEALELSETEVLAPTYTDPLKKLAVYVPKEYEEQVRAALGNAGA
GHIGEYSHCAFSSEGIGSFKPLDGAKPFIGEVGELELVHEVRLETVFPKSVEKAVINAMIKSHPYEEVAYDIYPVEQTPA
EKGLGRVGTLKNEMTLKEFALFVKDKLDVNGVRMVGDADSMVKKVAVLGGDGNKYIHHAKRKGADVYVTGDLYFHVAHDA
MMLGLNVVDPGHYAEKIMKEGVTRKLTSMCNDKKFGVNIFVSETDTNPFTFL

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family

Homologues:

Organism=Homo sapiens, GI215272360, Length=371, Percent_Identity=25.0673854447439, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI56605983, Length=371, Percent_Identity=25.0673854447439, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI209862879, Length=371, Percent_Identity=25.6064690026954, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI215272362, Length=124, Percent_Identity=29.8387096774194, Blast_Score=78, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321217, Length=138, Percent_Identity=32.6086956521739, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19921430, Length=137, Percent_Identity=37.956204379562, Blast_Score=102, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQFO_BACSU (P54472)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   A69954
- RefSeq:   NP_390396.1
- ProteinModelPortal:   P54472
- SMR:   P54472
- EnsemblBacteria:   EBBACT00000000167
- GeneID:   937901
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU25170
- NMPDR:   fig|224308.1.peg.2521
- GenoList:   BSU25170
- GeneTree:   EBGT00050000002197
- HOGENOM:   HBG554751
- OMA:   KLVVFVP
- ProtClustDB:   CLSK2460938
- BioCyc:   BSUB:BSU25170-MONOMER
- InterPro:   IPR002678
- InterPro:   IPR017221
- PANTHER:   PTHR13799
- PIRSF:   PIRSF037489
- TIGRFAMs:   TIGR00486

Pfam domain/function: PF01784 NIF3; SSF102705 interacting_NIF3

EC number: NA

Molecular weight: Translated: 40920; Mature: 40789

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSVNGQQIIQLFEQFSPKAYAVEGDKIGLQIGTLNKPIKNVMVTLDVLESVIDEAIEK
CCCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
EVDLIIAHHPPIFRSLKHISTDQPAGRLIEKCLKHDIAVYAAHTNLDVADGGVNDLLAEA
HHCEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHH
LELSETEVLAPTYTDPLKKLAVYVPKEYEEQVRAALGNAGAGHIGEYSHCAFSSEGIGSF
HHCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCC
KPLDGAKPFIGEVGELELVHEVRLETVFPKSVEKAVINAMIKSHPYEEVAYDIYPVEQTP
CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCC
AEKGLGRVGTLKNEMTLKEFALFVKDKLDVNGVRMVGDADSMVKKVAVLGGDGNKYIHHA
HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCCCHHHHHH
KRKGADVYVTGDLYFHVAHDAMMLGLNVVDPGHYAEKIMKEGVTRKLTSMCNDKKFGVNI
HHCCCEEEEECCEEEEEEHHHHEECCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
FVSETDTNPFTFL
EEEECCCCCCCCC
>Mature Secondary Structure 
AKSVNGQQIIQLFEQFSPKAYAVEGDKIGLQIGTLNKPIKNVMVTLDVLESVIDEAIEK
CCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
EVDLIIAHHPPIFRSLKHISTDQPAGRLIEKCLKHDIAVYAAHTNLDVADGGVNDLLAEA
HHCEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHH
LELSETEVLAPTYTDPLKKLAVYVPKEYEEQVRAALGNAGAGHIGEYSHCAFSSEGIGSF
HHCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCC
KPLDGAKPFIGEVGELELVHEVRLETVFPKSVEKAVINAMIKSHPYEEVAYDIYPVEQTP
CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCC
AEKGLGRVGTLKNEMTLKEFALFVKDKLDVNGVRMVGDADSMVKKVAVLGGDGNKYIHHA
HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCCCHHHHHH
KRKGADVYVTGDLYFHVAHDAMMLGLNVVDPGHYAEKIMKEGVTRKLTSMCNDKKFGVNI
HHCCCEEEEECCEEEEEEHHHHEECCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
FVSETDTNPFTFL
EEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377