Click here to switch to the map view.

The map label for this gene is trmK

Identifier: 16079573

GI number: 16079573

Start: 2598616

End: 2599266

Strand: Reverse

Name: trmK

Synonym: BSU25180

Alternate gene names: 16079573

Gene position: 2599266-2598616 (Counterclockwise)

Preceding gene: 16079574

Following gene: 16079572

Centisome position: 61.66

GC content: 46.85

Gene sequence:

>651_bases
ATGGCCGATATCGGCTCTGACCACGCCTACCTTCCTTGTTATGCGGTGCTGAATCATAAAGCCAGCGGGGCGATTGCCGG
AGAAATAACAGACGGCCCATTTTTGTCTGCAAAGCGGCAGGTTGAAAAATCAGGCTTAAACTCGCACATTTCTGTAAGGC
AGGGAGACGGACTGGAAGTGATTAAAAAAGGTGAAGCTGATGCCATTACGATTGCCGGAATGGGCGGGGCTTTGATCGCT
CACATTTTAGAAGCGGGCAAAGACAAATTAACGGGGAAGGAACGGCTCATTTTACAGCCGAATATTCATGCTGTTCATAT
CAGGGAGTGGCTTTATAAAGAAAGATATGCGCTGATAGATGAGGTAATCCTTGAAGAGGACGGAAAGTGCTATGAGGTGC
TGGTGGCAGAAGCGGGAGACAGGGATGCGGCTTATGACGGTATTTCTTTATCAGCCGGGATGCTCGTTGGCCCTTTCTTG
GCAAAAGAAAAAAATGCTGTCTTTTTGAAAAAGTGGACACAAGAGCTTCAGCACACTCAAAGCATTTATGAACAGATCAG
CCAAGCGGCGGATACAGAGCAAAACAAACAAAAATTAAAGGAGCTCGCCGATCGAATGGAGCTGTTAAAGGAGGTAATCG
ATCATGGCTAA

Upstream 100 bases:

>100_bases
AGGAAAAAATGATTGAGAAAAGTTGTGATGACAAGTGAACGAATTAAAATTATCTAAACGATTGCAAACAGTAGCGGAGT
ACATACCGAATGGAGCGGTG

Downstream 100 bases:

>100_bases
AAGTGTAAATGGGCAGCAGATCATCCAGCTGTTTGAACAATTTTCCCCGAAAGCCTATGCGGTTGAAGGAGATAAAATCG
GCCTGCAAATCGGCACCTTA

Product: tRNA: m1A22 methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MADIGSDHAYLPCYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEVIKKGEADAITIAGMGGALIA
HILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALIDEVILEEDGKCYEVLVAEAGDRDAAYDGISLSAGMLVGPFL
AKEKNAVFLKKWTQELQHTQSIYEQISQAADTEQNKQKLKELADRMELLKEVIDHG

Sequences:

>Translated_216_residues
MADIGSDHAYLPCYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEVIKKGEADAITIAGMGGALIA
HILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALIDEVILEEDGKCYEVLVAEAGDRDAAYDGISLSAGMLVGPFL
AKEKNAVFLKKWTQELQHTQSIYEQISQAADTEQNKQKLKELADRMELLKEVIDHG
>Mature_215_residues
ADIGSDHAYLPCYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEVIKKGEADAITIAGMGGALIAH
ILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALIDEVILEEDGKCYEVLVAEAGDRDAAYDGISLSAGMLVGPFLA
KEKNAVFLKKWTQELQHTQSIYEQISQAADTEQNKQKLKELADRMELLKEVIDHG

Specific function: Unknown

COG id: COG2384

COG function: function code R; Predicted SAM-dependent methyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQFN_BACSU (P54471)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   H69953
- RefSeq:   NP_390397.1
- ProteinModelPortal:   P54471
- SMR:   P54471
- PhosSite:   P54471
- EnsemblBacteria:   EBBACT00000003452
- GeneID:   937898
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU25180
- NMPDR:   fig|224308.1.peg.2522
- GenoList:   BSU25180
- GeneTree:   EBGT00050000002141
- HOGENOM:   HBG574272
- OMA:   AALRYGP
- ProtClustDB:   CLSK887591
- BioCyc:   BSUB:BSU25180-MONOMER
- InterPro:   IPR006901

Pfam domain/function: PF04816 DUF633

EC number: NA

Molecular weight: Translated: 23705; Mature: 23574

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIGSDHAYLPCYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEV
CCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHH
IKKGEADAITIAGMGGALIAHILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALID
EECCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
EVILEEDGKCYEVLVAEAGDRDAAYDGISLSAGMLVGPFLAKEKNAVFLKKWTQELQHTQ
HHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
SIYEQISQAADTEQNKQKLKELADRMELLKEVIDHG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADIGSDHAYLPCYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEV
CCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHH
IKKGEADAITIAGMGGALIAHILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALID
EECCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
EVILEEDGKCYEVLVAEAGDRDAAYDGISLSAGMLVGPFLAKEKNAVFLKKWTQELQHTQ
HHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
SIYEQISQAADTEQNKQKLKELADRMELLKEVIDHG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377